X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Forg%2Fvamsas%2Fobjects%2Fcore%2FDataSetAnnotations.java;h=cea5a3bad081cefd86b635d795fc178a9a3f9885;hb=c4e7fe16e2ab41d73595526249a9674995bb5740;hp=60f2d84db44091d6aa81a1c75d242d841f3a43bd;hpb=31a237800ee9c6a324426645d395ae32db885a8e;p=vamsas.git

diff --git a/src/org/vamsas/objects/core/DataSetAnnotations.java b/src/org/vamsas/objects/core/DataSetAnnotations.java
index 60f2d84..cea5a3b 100644
--- a/src/org/vamsas/objects/core/DataSetAnnotations.java
+++ b/src/org/vamsas/objects/core/DataSetAnnotations.java
@@ -45,12 +45,22 @@ implements java.io.Serializable
     /**
      * Field _end
      */
-    private java.lang.String _end;
+    private int _end;
+
+    /**
+     * keeps track of state for field: _end
+     */
+    private boolean _has_end;
 
     /**
      * Field _begin
      */
-    private java.lang.String _begin;
+    private int _begin;
+
+    /**
+     * keeps track of state for field: _begin
+     */
+    private boolean _has_begin;
 
     /**
      * Field _seqRef
@@ -154,6 +164,24 @@ implements java.io.Serializable
     } //-- void addProvenance(int, org.vamsas.objects.core.Provenance) 
 
     /**
+     * Method deleteBegin
+     * 
+     */
+    public void deleteBegin()
+    {
+        this._has_begin= false;
+    } //-- void deleteBegin() 
+
+    /**
+     * Method deleteEnd
+     * 
+     */
+    public void deleteEnd()
+    {
+        this._has_end= false;
+    } //-- void deleteEnd() 
+
+    /**
      * Method enumerateAnnotationElement
      * 
      * 
@@ -201,19 +229,13 @@ implements java.io.Serializable
             }
             else if (temp._type != null)
                 return false;
-            if (this._end != null) {
-                if (temp._end == null) return false;
-                else if (!(this._end.equals(temp._end))) 
-                    return false;
-            }
-            else if (temp._end != null)
+            if (this._end != temp._end)
                 return false;
-            if (this._begin != null) {
-                if (temp._begin == null) return false;
-                else if (!(this._begin.equals(temp._begin))) 
-                    return false;
-            }
-            else if (temp._begin != null)
+            if (this._has_end != temp._has_end)
+                return false;
+            if (this._begin != temp._begin)
+                return false;
+            if (this._has_begin != temp._has_begin)
                 return false;
             if (this._seqRef != null) {
                 if (temp._seqRef == null) return false;
@@ -313,13 +335,13 @@ implements java.io.Serializable
     /**
      * Returns the value of field 'begin'.
      * 
-     * @return String
+     * @return int
      * @return the value of field 'begin'.
      */
-    public java.lang.String getBegin()
+    public int getBegin()
     {
         return this._begin;
-    } //-- java.lang.String getBegin() 
+    } //-- int getBegin() 
 
     /**
      * Returns the value of field 'description'.
@@ -335,13 +357,13 @@ implements java.io.Serializable
     /**
      * Returns the value of field 'end'.
      * 
-     * @return String
+     * @return int
      * @return the value of field 'end'.
      */
-    public java.lang.String getEnd()
+    public int getEnd()
     {
         return this._end;
-    } //-- java.lang.String getEnd() 
+    } //-- int getEnd() 
 
     /**
      * Returns the value of field 'id'.
@@ -436,6 +458,30 @@ implements java.io.Serializable
     } //-- java.lang.String getType() 
 
     /**
+     * Method hasBegin
+     * 
+     * 
+     * 
+     * @return boolean
+     */
+    public boolean hasBegin()
+    {
+        return this._has_begin;
+    } //-- boolean hasBegin() 
+
+    /**
+     * Method hasEnd
+     * 
+     * 
+     * 
+     * @return boolean
+     */
+    public boolean hasEnd()
+    {
+        return this._has_end;
+    } //-- boolean hasEnd() 
+
+    /**
      * Method isValid
      * 
      * 
@@ -568,10 +614,11 @@ implements java.io.Serializable
      * 
      * @param begin the value of field 'begin'.
      */
-    public void setBegin(java.lang.String begin)
+    public void setBegin(int begin)
     {
         this._begin = begin;
-    } //-- void setBegin(java.lang.String) 
+        this._has_begin = true;
+    } //-- void setBegin(int) 
 
     /**
      * Sets the value of field 'description'.
@@ -588,10 +635,11 @@ implements java.io.Serializable
      * 
      * @param end the value of field 'end'.
      */
-    public void setEnd(java.lang.String end)
+    public void setEnd(int end)
     {
         this._end = end;
-    } //-- void setEnd(java.lang.String) 
+        this._has_end = true;
+    } //-- void setEnd(int) 
 
     /**
      * Sets the value of field 'id'.