X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Forg%2Fvamsas%2Fobjects%2Fcore%2FSequenceType.java;h=1adc80a3dd9ade2e83c4ddb59d2fc2aa4b9ed39a;hb=c4e7fe16e2ab41d73595526249a9674995bb5740;hp=4c16ba3155163f267a1eea11598e8adcfa545cba;hpb=06aadd1eccd43600c74b6f2dd69581c84e99aee6;p=vamsas.git
diff --git a/src/org/vamsas/objects/core/SequenceType.java b/src/org/vamsas/objects/core/SequenceType.java
index 4c16ba3..1adc80a 100644
--- a/src/org/vamsas/objects/core/SequenceType.java
+++ b/src/org/vamsas/objects/core/SequenceType.java
@@ -1,6 +1,6 @@
/*
* This class was automatically generated with
- * Castor 0.9.9M1, using an XML
+ * Castor 0.9.9M2, using an XML
* Schema.
* $Id$
*/
@@ -15,8 +15,6 @@ import java.io.IOException;
import java.io.Reader;
import java.io.Serializable;
import java.io.Writer;
-import java.util.Enumeration;
-import java.util.Vector;
import org.exolab.castor.xml.MarshalException;
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
@@ -67,11 +65,6 @@ implements java.io.Serializable
*/
private java.lang.String _name;
- /**
- * Field _dbRefList
- */
- private java.util.Vector _dbRefList;
-
//----------------/
//- Constructors -/
@@ -80,7 +73,6 @@ implements java.io.Serializable
public SequenceType()
{
super();
- _dbRefList = new Vector();
} //-- org.vamsas.objects.core.SequenceType()
@@ -89,33 +81,6 @@ implements java.io.Serializable
//-----------/
/**
- * Method addDbRef
- *
- *
- *
- * @param vDbRef
- */
- public void addDbRef(org.vamsas.objects.core.DbRef vDbRef)
- throws java.lang.IndexOutOfBoundsException
- {
- _dbRefList.addElement(vDbRef);
- } //-- void addDbRef(org.vamsas.objects.core.DbRef)
-
- /**
- * Method addDbRef
- *
- *
- *
- * @param index
- * @param vDbRef
- */
- public void addDbRef(int index, org.vamsas.objects.core.DbRef vDbRef)
- throws java.lang.IndexOutOfBoundsException
- {
- _dbRefList.insertElementAt(vDbRef, index);
- } //-- void addDbRef(int, org.vamsas.objects.core.DbRef)
-
- /**
* Method deleteEnd
*
*/
@@ -134,18 +99,6 @@ implements java.io.Serializable
} //-- void deleteStart()
/**
- * Method enumerateDbRef
- *
- *
- *
- * @return Enumeration
- */
- public java.util.Enumeration enumerateDbRef()
- {
- return _dbRefList.elements();
- } //-- java.util.Enumeration enumerateDbRef()
-
- /**
* Note: hashCode() has not been overriden
*
* @param obj
@@ -184,67 +137,12 @@ implements java.io.Serializable
}
else if (temp._name != null)
return false;
- if (this._dbRefList != null) {
- if (temp._dbRefList == null) return false;
- else if (!(this._dbRefList.equals(temp._dbRefList)))
- return false;
- }
- else if (temp._dbRefList != null)
- return false;
return true;
}
return false;
} //-- boolean equals(java.lang.Object)
/**
- * Method getDbRef
- *
- *
- *
- * @param index
- * @return DbRef
- */
- public org.vamsas.objects.core.DbRef getDbRef(int index)
- throws java.lang.IndexOutOfBoundsException
- {
- //-- check bounds for index
- if ((index < 0) || (index > _dbRefList.size())) {
- throw new IndexOutOfBoundsException("getDbRef: Index value '"+index+"' not in range [0.."+_dbRefList.size()+ "]");
- }
-
- return (org.vamsas.objects.core.DbRef) _dbRefList.elementAt(index);
- } //-- org.vamsas.objects.core.DbRef getDbRef(int)
-
- /**
- * Method getDbRef
- *
- *
- *
- * @return DbRef
- */
- public org.vamsas.objects.core.DbRef[] getDbRef()
- {
- int size = _dbRefList.size();
- org.vamsas.objects.core.DbRef[] mArray = new org.vamsas.objects.core.DbRef[size];
- for (int index = 0; index < size; index++) {
- mArray[index] = (org.vamsas.objects.core.DbRef) _dbRefList.elementAt(index);
- }
- return mArray;
- } //-- org.vamsas.objects.core.DbRef[] getDbRef()
-
- /**
- * Method getDbRefCount
- *
- *
- *
- * @return int
- */
- public int getDbRefCount()
- {
- return _dbRefList.size();
- } //-- int getDbRefCount()
-
- /**
* Returns the value of field 'end'.
*
* @return int
@@ -359,64 +257,6 @@ implements java.io.Serializable
} //-- void marshal(org.xml.sax.ContentHandler)
/**
- * Method removeAllDbRef
- *
- */
- public void removeAllDbRef()
- {
- _dbRefList.removeAllElements();
- } //-- void removeAllDbRef()
-
- /**
- * Method removeDbRef
- *
- *
- *
- * @param index
- * @return DbRef
- */
- public org.vamsas.objects.core.DbRef removeDbRef(int index)
- {
- java.lang.Object obj = _dbRefList.elementAt(index);
- _dbRefList.removeElementAt(index);
- return (org.vamsas.objects.core.DbRef) obj;
- } //-- org.vamsas.objects.core.DbRef removeDbRef(int)
-
- /**
- * Method setDbRef
- *
- *
- *
- * @param index
- * @param vDbRef
- */
- public void setDbRef(int index, org.vamsas.objects.core.DbRef vDbRef)
- throws java.lang.IndexOutOfBoundsException
- {
- //-- check bounds for index
- if ((index < 0) || (index > _dbRefList.size())) {
- throw new IndexOutOfBoundsException("setDbRef: Index value '"+index+"' not in range [0.."+_dbRefList.size()+ "]");
- }
- _dbRefList.setElementAt(vDbRef, index);
- } //-- void setDbRef(int, org.vamsas.objects.core.DbRef)
-
- /**
- * Method setDbRef
- *
- *
- *
- * @param dbRefArray
- */
- public void setDbRef(org.vamsas.objects.core.DbRef[] dbRefArray)
- {
- //-- copy array
- _dbRefList.removeAllElements();
- for (int i = 0; i < dbRefArray.length; i++) {
- _dbRefList.addElement(dbRefArray[i]);
- }
- } //-- void setDbRef(org.vamsas.objects.core.DbRef)
-
- /**
* Sets the value of field 'end'.
*
* @param end the value of field 'end'.