X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Forg%2Fvamsas%2Ftest%2Fsimpleclient%2FVamsasArchive.java;fp=src%2Forg%2Fvamsas%2Ftest%2Fsimpleclient%2FVamsasArchive.java;h=df18387aa593b9e95ce7e7fcde9eb43c4a87d022;hb=1f066b7b070342e9a41189e039e80d2fefb57976;hp=0b85bfc9d546e1fd232d8a7b86ffe30d26d2ec0f;hpb=e71de145bd7844a1a29220aef182210a68b635ad;p=vamsas.git

diff --git a/src/org/vamsas/test/simpleclient/VamsasArchive.java b/src/org/vamsas/test/simpleclient/VamsasArchive.java
index 0b85bfc..df18387 100644
--- a/src/org/vamsas/test/simpleclient/VamsasArchive.java
+++ b/src/org/vamsas/test/simpleclient/VamsasArchive.java
@@ -62,7 +62,13 @@ public class VamsasArchive {
         apuser.setOrganization("disOrganised");
         String appdata_ref = "vamsas:org.vamsas.test.simpleclient.VamsasArchive/"+apuser.getOrganization()+"/"+apuser.getFullname();
         org.vamsas.client.simpleclient.VamsasArchive va = new org.vamsas.client.simpleclient.VamsasArchive(backup, true);
+        log.info("Getting the document from the backup-original.");
+        VamsasDocument vadoc;
         VamsasArchiveReader vread = va.getOriginalArchiveReader();
+        
+        vadoc = va.getVamsasDocument();
+        log.info("Got document. Adding stuff.");
+        
         if (vread.getAppdataStream(appdata_ref)!=null) {
           int i=0;
           while (vread.getAppdataStream(appdata_ref+"/"+Integer.toString(++i))!=null)
@@ -76,19 +82,19 @@ public class VamsasArchive {
         apdos.writeObject(appdata_ref);
         apdos.writeObject(apuser); // some random content
         apdos.close(); // this should *not* close the archive!
+        log.info("Written Appdata Stream");
         log.info("Preparing to write new document.");
         doc.addApplicationData(appdata);
         doc.addVAMSAS(Core.getDemoVamsas());
-        PrintWriter vxml = varchive.getDocumentOutputStream();
-        doc.marshal(vxml);
+        va.putVamsasDocument(doc); // gets stream and puts it.
         // TODO: verify that the vxml stream close method overridden ?
         va.closeArchive();
         log.info("Dump of new vamsas document :");
         va = new org.vamsas.client.simpleclient.VamsasArchive(backup, true); // TODO - refactor Reader class to have deserializing helpers
         ArchiveReports.reportDocument(va.getVamsasDocument(), va.getOriginalArchiveReader(), true);
-        backup.delete(); // tidy up
+        // backup.delete(); // tidy up
       }
-      log.info("Cancelling write to original archive "+av);
+      log.info("Now Cancelling write to original archive "+av);
       varchive.cancelArchive();
 
     } catch (Exception e) {