X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fuk%2Fac%2Fvamsas%2Fobjects%2Futils%2FRange.java;h=74ace8e263a4c96cee5a707d859ba5c068ed40bf;hb=4aeaba257ad7e3206158565b356da7e4b15bf0a2;hp=f66df316f8d31fa7f1927a3fcf4fc593f6787006;hpb=d6f378ff4d767169376e6f2489a00b75d8a36e39;p=vamsas.git

diff --git a/src/uk/ac/vamsas/objects/utils/Range.java b/src/uk/ac/vamsas/objects/utils/Range.java
index f66df31..74ace8e 100644
--- a/src/uk/ac/vamsas/objects/utils/Range.java
+++ b/src/uk/ac/vamsas/objects/utils/Range.java
@@ -15,6 +15,7 @@ import uk.ac.vamsas.objects.core.Seg;
  *
  */
 public class Range {
+  static org.apache.commons.logging.Log log = org.apache.commons.logging.LogFactory.getFactory().getLog(Range.class);
 
   /**
    * get start<end range of segment, adjusting for inclusivity flag and
@@ -236,6 +237,15 @@ public class Range {
    */
   public static MapList parsemapType(MapType map)
   {
+    if (!map.getLocal().hasUnit() || !map.getMapped().hasUnit())
+    {
+      if (log.isDebugEnabled())
+      { 
+        log.debug(
+                "using default mapping length of 1:1 for map "
+              +(map.isRegistered() ? map.getVorbaId().toString() : ("<no Id registered> "+map.toString())));
+      }
+    }
     return parsemapType(map, 1, 1); 
   }