X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fanalysis%2FCrossRefTest.java;h=7361af7176b24932ef56bbd611c19929f3e3106e;hb=947109cebef3e98693ffc0a70b5bffcbd32217e2;hp=b3c78becef1b0cb282d7abe5533efba02ca03947;hpb=825ef108d5bfcf9b3e3eb9422b27658c80ab0854;p=jalview.git diff --git a/test/jalview/analysis/CrossRefTest.java b/test/jalview/analysis/CrossRefTest.java index b3c78be..7361af7 100644 --- a/test/jalview/analysis/CrossRefTest.java +++ b/test/jalview/analysis/CrossRefTest.java @@ -29,7 +29,6 @@ import static org.testng.AssertJUnit.assertSame; import static org.testng.AssertJUnit.assertTrue; import jalview.datamodel.AlignedCodonFrame; -import jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping; import jalview.datamodel.Alignment; import jalview.datamodel.AlignmentI; import jalview.datamodel.DBRefEntry; @@ -37,6 +36,7 @@ import jalview.datamodel.Mapping; import jalview.datamodel.Sequence; import jalview.datamodel.SequenceFeature; import jalview.datamodel.SequenceI; +import jalview.datamodel.SequenceMapping; import jalview.gui.JvOptionPane; import jalview.util.DBRefUtils; import jalview.util.MapList; @@ -311,9 +311,9 @@ public class CrossRefTest assertEquals(1, result.size()); assertSame(dna1, result.get(0)); // should now have a mapping from dna to pep1 - List mappings = acf.getMappings(); + List mappings = acf.getMappings(); assertEquals(1, mappings.size()); - SequenceToSequenceMapping mapping = mappings.get(0); + SequenceMapping mapping = mappings.get(0); assertSame(dna1, mapping.getFromSeq()); assertSame(pep1, mapping.getMapping().getTo()); MapList mapList = mapping.getMapping().getMap();