X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fbin%2FCommandsTest.java;h=62d1822bd1d13725673e0bfc3c98eefb7cef1a1f;hb=96f727b57ac588f9307116b79a7f1ab67dbff39b;hp=ecec67d8d5f42c479495c4653d18a5269f19e6b8;hpb=ddb6c7bd0ec05ecafb6cd6056efa696db7c96ba2;p=jalview.git

diff --git a/test/jalview/bin/CommandsTest.java b/test/jalview/bin/CommandsTest.java
index ecec67d..62d1822 100644
--- a/test/jalview/bin/CommandsTest.java
+++ b/test/jalview/bin/CommandsTest.java
@@ -49,7 +49,7 @@ public class CommandsTest
   }
 
   @AfterMethod(alwaysRun = true)
-  public void tearDown() 
+  public void tearDown()
   {
     try
     {
@@ -96,7 +96,7 @@ public class CommandsTest
   }
   */
 
-  @Test(groups = {"Functional","testTask3"}, dataProvider = "cmdLines")
+  @Test(groups = { "Functional", "testTask3" }, dataProvider = "cmdLines")
   public void commandsOpenTest(String cmdLine, boolean cmdArgs,
           int numFrames, String[] sequences)
   {
@@ -111,13 +111,13 @@ public class CommandsTest
       Assert.assertEquals(cmds.argsWereParsed(), cmdArgs,
               "Overall command parse and operation is false");
 
-      Assert.assertEquals(Desktop.getAlignFrames().length, numFrames,
+      Assert.assertEquals(Desktop.getDesktopAlignFrames().length, numFrames,
               "Wrong number of AlignFrames");
 
       if (sequences != null)
       {
         Set<String> openedSequenceNames = new HashSet<>();
-        AlignFrame[] afs = Desktop.getAlignFrames();
+        AlignFrame[] afs = Desktop.getDesktopAlignFrames();
         for (AlignFrame af : afs)
         {
           openedSequenceNames.addAll(
@@ -325,7 +325,7 @@ public class CommandsTest
 
   public static boolean lookForSequenceName(String sequenceName)
   {
-    AlignFrame[] afs = Desktop.getAlignFrames();
+    AlignFrame[] afs = Desktop.getDesktopAlignFrames();
     for (AlignFrame af : afs)
     {
       for (String name : af.getViewport().getAlignment().getSequenceNames())