X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fdatamodel%2FAlignedCodonFrameTest.java;h=35d92d35af96f9d4b971abdac6709b04aa15e0e6;hb=ab22918ab8fc67d30dad1fb1ae0f37e51f49df95;hp=c081cedc247bbc3ef668a393e3b7f4c7c6b73202;hpb=3412b273e964fb1a9d22564b04a5f0c827ec2461;p=jalview.git diff --git a/test/jalview/datamodel/AlignedCodonFrameTest.java b/test/jalview/datamodel/AlignedCodonFrameTest.java index c081ced..35d92d3 100644 --- a/test/jalview/datamodel/AlignedCodonFrameTest.java +++ b/test/jalview/datamodel/AlignedCodonFrameTest.java @@ -2,18 +2,20 @@ package jalview.datamodel; import static org.testng.AssertJUnit.assertEquals; import static org.testng.AssertJUnit.assertNull; -import org.testng.annotations.Test; + import jalview.util.MapList; import java.util.Arrays; +import org.testng.annotations.Test; + public class AlignedCodonFrameTest { /** * Test the method that locates the first aligned sequence that has a mapping. */ - @Test + @Test(groups ={ "Functional" }) public void testFindAlignedSequence() { AlignmentI cdna = new Alignment(new SequenceI[] @@ -61,7 +63,7 @@ public class AlignedCodonFrameTest /** * Test the method that locates the mapped codon for a protein position. */ - @Test + @Test(groups ={ "Functional" }) public void testGetMappedRegion() { // introns lower case, exons upper case @@ -109,7 +111,7 @@ public class AlignedCodonFrameTest assertNull(acf.getMappedRegion(seq1, aseq2, 1)); } - @Test + @Test(groups ={ "Functional" }) public void testGetMappedCodon() { final Sequence seq1 = new Sequence("Seq1", "c-G-TA-gC-gT-T");