X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fdatamodel%2FColumnSelectionTest.java;fp=test%2Fjalview%2Fdatamodel%2FColumnSelectionTest.java;h=86e79494d6f21e136d20242fa8bbfd1b763eda21;hb=6e2c975d1b0b32b54da3e2854a75dae607a4bfd3;hp=63f80b2126e1fe15b08101c80864489052089af9;hpb=f74464fb7f5f0e905d64a497e10bcdf0d6e7decb;p=jalview.git

diff --git a/test/jalview/datamodel/ColumnSelectionTest.java b/test/jalview/datamodel/ColumnSelectionTest.java
index 63f80b2..86e7949 100644
--- a/test/jalview/datamodel/ColumnSelectionTest.java
+++ b/test/jalview/datamodel/ColumnSelectionTest.java
@@ -155,6 +155,21 @@ public class ColumnSelectionTest
 
   }
 
+  @Test(groups={"Functional"})
+  public void testLocateVisibleBoundsPathologicals()
+  {
+    // test some pathological cases we missed
+    AlignmentI al = new Alignment(new SequenceI[] { new Sequence("refseqGaptest","KTDVTI----------NFI-----G----L")});
+    ColumnSelection cs = new ColumnSelection();
+    cs.hideInsertionsFor(al.getSequenceAt(0));
+    assertEquals(
+            "G",
+            ""
+                    + al.getSequenceAt(0).getCharAt(
+                            cs.adjustForHiddenColumns(9)));
+
+
+  }
   @Test(groups = { "Functional" })
   public void testHideColumns()
   {