X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fext%2Fensembl%2FEnsemblSeqProxyTest.java;h=d3a6e32213b3e628a830b203b63803fbe200c397;hb=ea3d24d953af89ca95d4480371149b70abbfcc67;hp=2d3948f80c9ede67d10e93b2c3a64eda5574886f;hpb=cbc07eab0291f023f89b2554c488ae9e4587ae2a;p=jalview.git diff --git a/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java b/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java index 2d3948f..d3a6e32 100644 --- a/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java +++ b/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.ext.ensembl; import static org.testng.AssertJUnit.assertEquals; @@ -23,7 +43,6 @@ import org.testng.annotations.BeforeClass; import org.testng.annotations.DataProvider; import org.testng.annotations.Test; - public class EnsemblSeqProxyTest { private static final Object[][] allSeqs = new Object[][] { @@ -125,12 +144,11 @@ public class EnsemblSeqProxyTest } @Test(dataProvider = "ens_seqs", suiteName = "live") - public void testGetOneSeqs(EnsemblRestClient proxy, String sq, String fastasq) - throws Exception + public void testGetOneSeqs(EnsemblRestClient proxy, String sq, + String fastasq) throws Exception { FileParse fp = proxy.getSequenceReader(Arrays - .asList(new String[] - { sq })); + .asList(new String[] { sq })); SequenceI[] sqs = new FastaFile(fp).getSeqsAsArray(); FastaFile trueRes = new FastaFile(fastasq, AppletFormatAdapter.PASTE); SequenceI[] trueSqs = trueRes.getSeqsAsArray(); @@ -152,7 +170,7 @@ public class EnsemblSeqProxyTest "Sequences differ for " + tr.getName() + "\n" + "Exp:" + tr.getSequenceAsString() + "\n" + "Got:" + rseq[0].getSequenceAsString()); - + } } @@ -253,4 +271,4 @@ public class EnsemblSeqProxyTest EnsemblSeqProxy.sortFeatures(sfs, false); assertArrayEquals(new SequenceFeature[] { sf1, sf3, sf2, sf4 }, sfs); } -} \ No newline at end of file +}