X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fext%2Fensembl%2FEnsemblSeqProxyTest.java;h=e97723369c5813ebb55afab8097c32cde61b7dfe;hb=3a360da4cea75d5ff30dfa3d8cf657f8517fe04d;hp=50fab083a4c5897d8567cefab9fdf90b23507975;hpb=5f4e1e4c330b045e9c8bce28ee132a0fca3834d8;p=jalview.git diff --git a/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java b/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java index 50fab08..e977233 100644 --- a/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java +++ b/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java @@ -29,7 +29,7 @@ import jalview.datamodel.Alignment; import jalview.datamodel.SequenceFeature; import jalview.datamodel.SequenceI; import jalview.gui.JvOptionPane; -import jalview.io.AppletFormatAdapter; +import jalview.io.DataSourceType; import jalview.io.FastaFile; import jalview.io.FileParse; import jalview.io.gff.SequenceOntologyFactory; @@ -159,7 +159,7 @@ public class EnsemblSeqProxyTest FileParse fp = proxy.getSequenceReader(Arrays .asList(new String[] { sq })); SequenceI[] sqs = new FastaFile(fp).getSeqsAsArray(); - FastaFile trueRes = new FastaFile(fastasq, AppletFormatAdapter.PASTE); + FastaFile trueRes = new FastaFile(fastasq, DataSourceType.PASTE); SequenceI[] trueSqs = trueRes.getSeqsAsArray(); Assert.assertEquals(sqs.length, trueSqs.length, "Different number of sequences retrieved for query " + sq);