X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fio%2FNewickFileTests.java;h=466f218be7cbf9ca165d9c915226706b2e6bfd14;hb=0ccaf35f7e6a5cc62d4f433b39d574d0aa4b2d26;hp=beedb1116bd484004e5b588186b74d4bc11cce34;hpb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;p=jalview.git

diff --git a/test/jalview/io/NewickFileTests.java b/test/jalview/io/NewickFileTests.java
index beedb11..466f218 100644
--- a/test/jalview/io/NewickFileTests.java
+++ b/test/jalview/io/NewickFileTests.java
@@ -24,6 +24,7 @@ import static org.testng.ConversionUtils.wrapDataProvider;
 
 import jalview.analysis.SequenceIdMatcher;
 import jalview.analysis.TreeModel;
+import jalview.datamodel.BinaryNode;
 import jalview.datamodel.SequenceI;
 import jalview.datamodel.SequenceNode;
 import jalview.gui.JvOptionPane;
@@ -105,7 +106,7 @@ public class NewickFileTests
       AssertJUnit.assertTrue(
               stage + "Invalid Tree '" + nf.getWarningMessage() + "'",
               nf.isValid());
-      SequenceNode tree = nf.getTree();
+      BinaryNode tree = nf.getTree();
       AssertJUnit.assertTrue(stage + "Null Tree", tree != null);
       stage = "Creating newick file from testTree " + treename;
       String gentree = new NewickFile(tree).print(nf.HasBootstrap(),
@@ -119,11 +120,11 @@ public class NewickFileTests
               stage + "Newick file is invalid ('"
                       + nf_regen.getWarningMessage() + "')",
               nf_regen.isValid());
-      SequenceNode tree_regen = nf.getTree();
+      BinaryNode tree_regen = nf.getTree();
       AssertJUnit.assertTrue(stage + "Null Tree", tree_regen != null);
       stage = "Compare original and generated tree" + treename;
 
-      Vector<SequenceNode> oseqs, nseqs;
+      Vector<BinaryNode> oseqs, nseqs;
       oseqs = new TreeModel(new SequenceI[0], null, nf)
               .findLeaves(nf.getTree());
       AssertJUnit.assertTrue(stage + "No nodes in original tree.",