X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fproject%2FJalview2xmlTests.java;h=dcf8febdc81d9cfddd220e86967300e24361f5f0;hb=96f727b57ac588f9307116b79a7f1ab67dbff39b;hp=c070edb3fda271339dfd4e817bc01e04d8cac82d;hpb=d6eab72955158d1e070b45dfd93e55c64a47ff86;p=jalview.git diff --git a/test/jalview/project/Jalview2xmlTests.java b/test/jalview/project/Jalview2xmlTests.java index c070edb..dcf8feb 100644 --- a/test/jalview/project/Jalview2xmlTests.java +++ b/test/jalview/project/Jalview2xmlTests.java @@ -32,7 +32,9 @@ import java.awt.Color; import java.awt.Rectangle; import java.io.File; import java.io.IOException; +import java.math.BigInteger; import java.util.ArrayList; +import java.util.BitSet; import java.util.HashMap; import java.util.List; import java.util.Locale; @@ -45,6 +47,7 @@ import org.testng.AssertJUnit; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; +import jalview.analysis.AlignmentUtils; import jalview.analysis.scoremodels.SimilarityParams; import jalview.api.AlignViewportI; import jalview.api.AlignmentViewPanel; @@ -54,12 +57,17 @@ import jalview.bin.Cache; import jalview.datamodel.AlignmentAnnotation; import jalview.datamodel.AlignmentI; import jalview.datamodel.Annotation; +import jalview.datamodel.ContactListI; +import jalview.datamodel.ContactMatrix; +import jalview.datamodel.ContactMatrixI; import jalview.datamodel.DBRefEntry; import jalview.datamodel.GeneLocus; +import jalview.datamodel.GroupSet; import jalview.datamodel.HiddenSequences; import jalview.datamodel.Mapping; import jalview.datamodel.PDBEntry; import jalview.datamodel.PDBEntry.Type; +import jalview.datamodel.Sequence; import jalview.datamodel.Sequence.DBModList; import jalview.datamodel.SequenceCollectionI; import jalview.datamodel.SequenceFeature; @@ -94,9 +102,12 @@ import jalview.schemes.StrandColourScheme; import jalview.schemes.TCoffeeColourScheme; import jalview.structure.StructureImportSettings; import jalview.util.MapList; +import jalview.util.Platform; import jalview.util.matcher.Condition; import jalview.viewmodel.AlignmentViewport; import jalview.viewmodel.seqfeatures.FeatureRendererModel; +import jalview.ws.datamodel.MappableContactMatrixI; +import jalview.ws.datamodel.alphafold.PAEContactMatrix; @Test(singleThreaded = true) public class Jalview2xmlTests extends Jalview2xmlBase @@ -106,6 +117,8 @@ public class Jalview2xmlTests extends Jalview2xmlBase @BeforeClass(alwaysRun = true) public void setUpJvOptionPane() { + if (Desktop.instance != null) + Desktop.instance.closeAll_actionPerformed(null); JvOptionPane.setInteractiveMode(false); JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); } @@ -239,9 +252,8 @@ public class Jalview2xmlTests extends Jalview2xmlBase boolean diffseqcols = false, diffgseqcols = false; SequenceI[] sqs = af.getViewport().getAlignment().getSequencesArray(); - for (int p = 0, - pSize = af.getViewport().getAlignment().getWidth(); p < pSize - && (!diffseqcols || !diffgseqcols); p++) + for (int p = 0, pSize = af.getViewport().getAlignment() + .getWidth(); p < pSize && (!diffseqcols || !diffgseqcols); p++) { if (_rcs.findColour(sqs[0].getCharAt(p), p, sqs[0], null, 0f) != _rcs .findColour(sqs[5].getCharAt(p), p, sqs[5], null, 0f)) @@ -260,9 +272,8 @@ public class Jalview2xmlTests extends Jalview2xmlBase assertTrue(__rcs.isSeqAssociated(), "Group Annotation colourscheme wasn't sequence associated"); - for (int p = 0, - pSize = af.getViewport().getAlignment().getWidth(); p < pSize - && (!diffseqcols || !diffgseqcols); p++) + for (int p = 0, pSize = af.getViewport().getAlignment() + .getWidth(); p < pSize && (!diffseqcols || !diffgseqcols); p++) { if (_rgcs.findColour(sqs[1].getCharAt(p), p, sqs[1], null, 0f) != _rgcs.findColour(sqs[2].getCharAt(p), p, sqs[2], null, @@ -279,12 +290,12 @@ public class Jalview2xmlTests extends Jalview2xmlBase @Test(groups = { "Functional" }) public void gatherViewsHere() throws Exception { - int origCount = Desktop.getAlignFrames() == null ? 0 - : Desktop.getAlignFrames().length; + int origCount = Desktop.getDesktopAlignFrames() == null ? 0 + : Desktop.getDesktopAlignFrames().length; AlignFrame af = new FileLoader().LoadFileWaitTillLoaded( "examples/exampleFile_2_7.jar", DataSourceType.FILE); assertNotNull(af, "Didn't read in the example file correctly."); - assertTrue(Desktop.getAlignFrames().length == 1 + origCount, + assertTrue(Desktop.getDesktopAlignFrames().length == 1 + origCount, "Didn't gather the views in the example file."); } @@ -422,7 +433,7 @@ public class Jalview2xmlTests extends Jalview2xmlBase AlignFrame af = new FileLoader().LoadFileWaitTillLoaded( "examples/exampleFile_2_7.jar", DataSourceType.FILE); - Assert.assertEquals(Desktop.getAlignFrames().length, 1); + Assert.assertEquals(Desktop.getDesktopAlignFrames().length, 1); String afid = af.getViewport().getSequenceSetId(); // check FileLoader returned a reference to the one alignFrame that is @@ -432,8 +443,8 @@ public class Jalview2xmlTests extends Jalview2xmlBase Desktop.explodeViews(af); - int oldviews = Desktop.getAlignFrames().length; - Assert.assertEquals(Desktop.getAlignFrames().length, + int oldviews = Desktop.getDesktopAlignFrames().length; + Assert.assertEquals(Desktop.getDesktopAlignFrames().length, Desktop.getAlignmentPanels(afid).length); File tfile = File.createTempFile("testStoreAndRecoverExpanded", ".jvp"); try @@ -447,14 +458,14 @@ public class Jalview2xmlTests extends Jalview2xmlBase Assert.fail("Didn't save the expanded view state", e); } Desktop.instance.closeAll_actionPerformed(null); - if (Desktop.getAlignFrames() != null) + if (Desktop.getDesktopAlignFrames() != null) { - Assert.assertEquals(Desktop.getAlignFrames().length, 0); + Assert.assertEquals(Desktop.getDesktopAlignFrames().length, 0); } af = new FileLoader().LoadFileWaitTillLoaded(tfile.getAbsolutePath(), DataSourceType.FILE); Assert.assertNotNull(af); - Assert.assertEquals(Desktop.getAlignFrames().length, + Assert.assertEquals(Desktop.getDesktopAlignFrames().length, Desktop.getAlignmentPanels( af.getViewport().getSequenceSetId()).length); Assert.assertEquals(Desktop @@ -511,9 +522,9 @@ public class Jalview2xmlTests extends Jalview2xmlBase Assert.fail("Didn't save the expanded view state", e); } Desktop.instance.closeAll_actionPerformed(null); - if (Desktop.getAlignFrames() != null) + if (Desktop.getDesktopAlignFrames() != null) { - Assert.assertEquals(Desktop.getAlignFrames().length, 0); + Assert.assertEquals(Desktop.getDesktopAlignFrames().length, 0); } af = new FileLoader().LoadFileWaitTillLoaded(tfile.getAbsolutePath(), @@ -597,9 +608,11 @@ public class Jalview2xmlTests extends Jalview2xmlBase * test for patch release versions */ assertFalse(Jalview2XML.isVersionStringLaterThan("2.11.3.0", "2.11.2")); - assertTrue(Jalview2XML.isVersionStringLaterThan("2.11.3.0","2.11.4")); - assertFalse(Jalview2XML.isVersionStringLaterThan("2.12.2.0b1","2.12.2.0")); - assertFalse(Jalview2XML.isVersionStringLaterThan("2.12.2.3","2.12.2.2")); + assertTrue(Jalview2XML.isVersionStringLaterThan("2.11.3.0", "2.11.4")); + assertFalse( + Jalview2XML.isVersionStringLaterThan("2.12.2.0b1", "2.12.2.0")); + assertFalse( + Jalview2XML.isVersionStringLaterThan("2.12.2.3", "2.12.2.2")); } @@ -688,9 +701,9 @@ public class Jalview2xmlTests extends Jalview2xmlBase Assert.fail("Didn't save the expanded view state", e); } Desktop.instance.closeAll_actionPerformed(null); - if (Desktop.getAlignFrames() != null) + if (Desktop.getDesktopAlignFrames() != null) { - Assert.assertEquals(Desktop.getAlignFrames().length, 0); + Assert.assertEquals(Desktop.getDesktopAlignFrames().length, 0); } af = new FileLoader().LoadFileWaitTillLoaded(tfile.getAbsolutePath(), @@ -782,9 +795,9 @@ public class Jalview2xmlTests extends Jalview2xmlBase Assert.fail("Didn't save the state", e); } Desktop.instance.closeAll_actionPerformed(null); - if (Desktop.getAlignFrames() != null) + if (Desktop.getDesktopAlignFrames() != null) { - Assert.assertEquals(Desktop.getAlignFrames().length, 0); + Assert.assertEquals(Desktop.getDesktopAlignFrames().length, 0); } AlignFrame restoredFrame = new FileLoader().LoadFileWaitTillLoaded( @@ -867,8 +880,11 @@ public class Jalview2xmlTests extends Jalview2xmlBase acg.setPredefinedColours(true); af.changeColour(acg); Color seqcol[] = new Color[3]; - for (int iStart=fsq.findIndex(fsq.getStart()),i=0;i<3;i++) { - seqcol[i] = af.alignPanel.getSeqPanel().seqCanvas.getSequenceRenderer().getResidueColour(fsq, iStart+i, null); + for (int iStart = fsq.findIndex(fsq.getStart()), i = 0; i < 3; i++) + { + seqcol[i] = af.alignPanel.getSeqPanel().seqCanvas + .getSequenceRenderer() + .getResidueColour(fsq, iStart + i, null); } /* * save project, close windows, reload project, verify @@ -877,7 +893,7 @@ public class Jalview2xmlTests extends Jalview2xmlBase "testStoreAndRecoverAnnotRowElemColors", ".jvp"); tfile.deleteOnExit(); new Jalview2XML(false).saveState(tfile); - //Desktop.instance.closeAll_actionPerformed(null); + // Desktop.instance.closeAll_actionPerformed(null); af = new FileLoader().LoadFileWaitTillLoaded(tfile.getAbsolutePath(), DataSourceType.FILE); Assert.assertNotNull(af, "Failed to reload project"); @@ -885,9 +901,10 @@ public class Jalview2xmlTests extends Jalview2xmlBase * verify alignment annotation has colors */ av = af.getViewport(); - + ColourSchemeI loadedCscheme = av.getGlobalColourScheme(); - Assert.assertTrue(loadedCscheme instanceof AnnotationColourGradient,"Didn't apply Annotation colour gradient"); + Assert.assertTrue(loadedCscheme instanceof AnnotationColourGradient, + "Didn't apply Annotation colour gradient"); acg = (AnnotationColourGradient) loadedCscheme; assertTrue(acg.isSeqAssociated()); assertTrue(acg.isPredefinedColours()); @@ -900,13 +917,16 @@ public class Jalview2xmlTests extends Jalview2xmlBase for (int iStart = al.getSequenceAt(0) .findIndex(al.getSequenceAt(0).getStart()), i = 0; i < 3; i++) { - Assert.assertTrue(ala.annotations[i].colour!=null); + Assert.assertTrue(ala.annotations[i].colour != null); Assert.assertTrue(ala.annotations[i].colour.equals(annots[i].colour)); - Color newseqcol = af.alignPanel.getSeqPanel().seqCanvas.getSequenceRenderer().getResidueColour(fsq, iStart+i, null); - Assert.assertTrue(seqcol[i].equals(newseqcol),"Sequence shading is different"); + Color newseqcol = af.alignPanel.getSeqPanel().seqCanvas + .getSequenceRenderer() + .getResidueColour(fsq, iStart + i, null); + Assert.assertTrue(seqcol[i].equals(newseqcol), + "Sequence shading is different"); } - + } /** @@ -1200,7 +1220,7 @@ public class Jalview2xmlTests extends Jalview2xmlBase assertNotNull(af); AlignmentI ds = null; - for (AlignFrame alignFrame : Desktop.getAlignFrames()) + for (AlignFrame alignFrame : Desktop.getDesktopAlignFrames()) { if (ds == null) { @@ -1487,7 +1507,8 @@ public class Jalview2xmlTests extends Jalview2xmlBase } /** - * Test that a view from an older version of Jalview is restored with Overview automatically shown when the preference is set + * Test that a view from an older version of Jalview is restored with Overview + * automatically shown when the preference is set * * @throws Exception */ @@ -1512,7 +1533,7 @@ public class Jalview2xmlTests extends Jalview2xmlBase * * @throws Exception */ - @Test(groups = {"Functional"}, enabled=false) + @Test(groups = { "Functional" }, enabled = false) public void testReloadActuallyReloads() throws Exception { Desktop.instance.closeAll_actionPerformed(null); @@ -1526,4 +1547,273 @@ public class Jalview2xmlTests extends Jalview2xmlBase // af exists still but isn't shown assertTrue(af.isClosed()); } + + @Test(groups = { "Functional" }) + public void testMatrixToFloatsAndBack() + { + int imax = 2000; + int i = imax; + SequenceI sq = new Sequence("dummy", "SEQ"); + while (sq.getLength() < i) + { + sq.setSequence(sq.getSequenceAsString() + 'Q'); + } + float[][] paevals = new float[i][i]; + for (i = imax - 1; i >= 0; i--) + { + for (int j = 0; j <= i; j++) + { + paevals[i][j] = ((i - j < 2) + || ((i > 1 && i < 5) && (j > 1 && i < 5))) ? 1 : 0f; + paevals[j][i] = -paevals[i][j]; + } + } + PAEContactMatrix dummyMat = new PAEContactMatrix(sq, paevals); + String content = ContactMatrix.contactToFloatString(dummyMat); + Assert.assertTrue(content.contains("\t1.")); // at least one element must be + // 1 + float[][] vals = ContactMatrix.fromFloatStringToContacts(content, + sq.getLength(), sq.getLength()); + assertEquals(vals[3][4], paevals[3][4]); + assertEquals(vals[4][3], paevals[4][3]); + + // test recovery + for (i = 0; i < imax; i++) + { + for (int j = 0; j < imax; j++) + { + assertEquals(vals[i][j], paevals[i][j]); + } + } + } + + @Test(groups = { "Functional" }) + public void testPAEsaveRestore() throws Exception + { + Desktop.instance.closeAll_actionPerformed(null); + AlignFrame af = new FileLoader().LoadFileWaitTillLoaded( + ">seq1\nMATRSQFLVNF\n", DataSourceType.PASTE); + AlignmentI al = af.getViewport().getAlignment(); + // PAE matrices are added as reference annotation to the dataset sequence + // at least for now. + SequenceI sq = al.getSequenceAt(0).getDatasetSequence(); + int i = sq.getLength(); + float[][] paevals = new float[i][i]; + for (i = i - 1; i >= 0; i--) + { + for (int j = 0; j <= i; j++) + { + paevals[i][j] = ((i - j < 2) + || ((i > 1 && i < 5) && (j > 1 && i < 5))) ? 1 : 0f; + paevals[j][i] = -paevals[i][j]; + } + } + PAEContactMatrix dummyMat = new PAEContactMatrix(sq, paevals); + String content = ContactMatrix.contactToFloatString(dummyMat); + Assert.assertTrue(content.contains("\t1.")); // at least one element must be + // 1 + float[][] vals = ContactMatrix.fromFloatStringToContacts(content, + sq.getLength(), sq.getLength()); + assertEquals(vals[3][4], paevals[3][4]); + assertEquals(vals[4][3], paevals[4][3]); + dummyMat.setGroupSet(GroupSet.makeGroups(dummyMat, false, 0.5f, false)); + Assert.assertNotSame(dummyMat.getNewick(), ""); + AlignmentAnnotation paeCm = sq.addContactList(dummyMat); + al.addAnnotation(paeCm); + // verify store/restore of group bitsets + for (BitSet gp : dummyMat.getGroups()) + { + StringBuilder sb = new StringBuilder(); + for (long val : gp.toLongArray()) + { + if (sb.length() > 0) + { + sb.append(","); + } + sb.append(val); + } + String[] longvals = sb.toString().split(","); + long[] newlongvals = new long[longvals.length]; + for (int lv = 0; lv < longvals.length; lv++) + { + try + { + newlongvals[lv] = Long.valueOf(longvals[lv]); + } catch (Exception x) + { + Assert.fail("failed to deserialise bitset element "); + } + } + BitSet newGp = BitSet.valueOf(newlongvals); + assertTrue(gp.equals(newGp)); + } + File tfile = File.createTempFile("testStoreAndRecoverPAEmatrix", + ".jvp"); + new Jalview2XML(false).saveState(tfile); + Desktop.instance.closeAll_actionPerformed(null); + + af = new FileLoader().LoadFileWaitTillLoaded(tfile.getAbsolutePath(), + DataSourceType.FILE); + AlignmentI newAl = af.getViewport().getAlignment(); + SequenceI newSeq = newAl.getSequenceAt(0).getDatasetSequence(); + // check annotation of the expected type exists + Assert.assertEquals(newSeq.getAnnotation().length, 1); + Assert.assertEquals(newSeq.getAnnotation()[0].graph, paeCm.graph); + + // check a contact matrix was recovered + Assert.assertEquals(newSeq.getContactMaps().size(), 1); + // and can be found for the annotation on the sequence + ContactMatrixI restoredMat = newSeq + .getContactMatrixFor(newSeq.getAnnotation()[0]); + Assert.assertNotNull(restoredMat); + MapList oldMap = ((MappableContactMatrixI) dummyMat).getMapFor(sq); + MapList newMap = ((MappableContactMatrixI) restoredMat) + .getMapFor(newSeq); + Assert.assertEquals(oldMap.getFromRanges(), newMap.getFromRanges()); + Assert.assertEquals(oldMap.getToRanges(), newMap.getToRanges()); + Assert.assertEquals(oldMap.getFromRatio(), newMap.getFromRatio()); + Assert.assertEquals(oldMap.getToRatio(), newMap.getToRatio()); + for (i = sq.getLength() - 1; i >= 0; i--) + { + ContactListI oldCM = dummyMat.getContactList(i), + newCM = restoredMat.getContactList(i); + for (int j = oldCM.getContactHeight(); j >= 0; j--) + { + double old_j = oldCM.getContactAt(j); + double new_j = newCM.getContactAt(j); + Assert.assertEquals(old_j, new_j); + } + } + Assert.assertEquals(restoredMat.hasGroups(), dummyMat.hasGroups()); + Assert.assertEquals(restoredMat.getGroups(), dummyMat.getGroups()); + Assert.assertEquals(restoredMat.hasTree(), dummyMat.hasTree()); + Assert.assertEquals(restoredMat.getNewick(), dummyMat.getNewick()); + + // verify no duplicate PAE matrix data when new view created and saved + + // add reference annotations to view first, then copy + AlignmentUtils.addReferenceAnnotationTo(newAl, newAl.getSequenceAt(0), + newSeq.getAnnotation()[0], null); + + AlignmentViewPanel newview = af.newView("copy of PAE", true); + + // redundant asserts here check all is good with the new view firest... + AlignmentI newviewAl = newview.getAlignment(); + SequenceI newviewSeq = newviewAl.getSequenceAt(0); + // check annotation of the expected type exists + Assert.assertEquals(newviewSeq.getAnnotation().length, 1); + Assert.assertEquals(newviewSeq.getAnnotation()[0].graph, paeCm.graph); + // check we have just one contact matrix mapping + Assert.assertEquals(newviewSeq.getContactMaps().size(), 1); + + // and can be found for the annotation on the sequence + ContactMatrixI newviewMat = newviewSeq + .getContactMatrixFor(newviewSeq.getAnnotation()[0]); + Assert.assertNotNull(newviewMat); + + Assert.assertTrue(newviewMat == restoredMat); + + // save the two views and restore. Now look at visible annotation to check + // all views have shared refs. + + tfile = File.createTempFile("testStoreAndRecoverPAEmatrixTwoViews", + ".jvp"); + new Jalview2XML(false).saveState(tfile); + Desktop.instance.closeAll_actionPerformed(null); + + af = new FileLoader().LoadFileWaitTillLoaded(tfile.getAbsolutePath(), + DataSourceType.FILE); + newAl = af.getAlignPanels().get(0).getAlignment(); + AlignmentAnnotation view1aa = newAl.getSequenceAt(0).getAnnotation()[0]; + + newviewAl = af.getAlignPanels().get(1).getAlignment(); + AlignmentAnnotation view2aa = newviewAl.getSequenceAt(0) + .getAnnotation()[0]; + + // annotations are shared across alignment views - so should still have an + // identical pair of annotations. + Assert.assertTrue(view1aa == view2aa); + // identical annotations means identical contact matrix mappings + Assert.assertEquals( + newAl.getDataset().getSequenceAt(0).getContactMaps().size(), 1); + + // TODO Verify when distinct mappable PAEs are created, only one PAE dataset + // is actually held. + // Assert.assertTrue(view1aa!=view2aa); + // restoredMat = newAl.getContactMatrixFor(view1aa); + // newviewMat = newviewAl.getContactMatrixFor(view2aa); + // Assert.assertTrue(restoredMat!=newviewMat); + + } + + @Test(groups = "Functional") + public void testStoreAndRestoreIDwidthAndAnnotationHeight() + throws IOException + { + Desktop.instance.closeAll_actionPerformed(null); + final String SECONDVIEW = "With Diffferent IDwidth"; + // create a new tempfile + File tempfile = File.createTempFile("jvIdWidthStoreRestore", "jvp"); + + AlignFrame af = new FileLoader().LoadFileWaitTillLoaded( + "examples/exampleFile.jvp", DataSourceType.FILE); + assertNotNull(af, "Didn't read in the example file correctly."); + // FIXME JAL-4281 test made platform dependent to pass, but probably + // shouldn't be platform dependent + assertEquals(af.alignPanel.getAlignViewport().getIdWidth(), + Platform.isAMacAndNotJS() ? 144 : 138, + "Legacy project import should have fixed ID width"); + assertTrue( + af.alignPanel.getIdPanel().getIdCanvas().isManuallyAdjusted()); + + af.alignPanel.getAlignViewport().setIdWidth(100); + af.alignPanel.updateLayout(); + assertTrue( + af.alignPanel.getIdPanel().getIdCanvas().isManuallyAdjusted()); + + Jalview2XML jv2xml = new jalview.project.Jalview2XML(false); + tempfile.delete(); + jv2xml.saveState(tempfile); + assertTrue(jv2xml.errorMessage == null, + "Failed to save dummy project with PCA: test broken"); + af = null; + // load again. + Desktop.instance.closeAll_actionPerformed(null); + af = new FileLoader().LoadFileWaitTillLoaded( + tempfile.getCanonicalPath(), DataSourceType.FILE); + assertTrue( + af.alignPanel.getIdPanel().getIdCanvas().isManuallyAdjusted()); + assertEquals(af.alignPanel.getAlignViewport().getIdWidth(), 100, + "New project exported and import should have adjusted ID width"); + + af.alignPanel.getAlignViewport().setIdWidth(100); + af.alignPanel.updateLayout(); + assertTrue( + af.alignPanel.getIdPanel().getIdCanvas().isManuallyAdjusted()); + + // now make it autoadjusted + af.alignPanel.getAlignViewport().setIdWidth(-1); + af.alignPanel.getIdPanel().getIdCanvas().setManuallyAdjusted(false); + af.alignPanel.updateLayout(); + assertFalse( + af.alignPanel.getIdPanel().getIdCanvas().isManuallyAdjusted()); + assertTrue(af.alignPanel.getAlignViewport().getIdWidth() > -1, + "New project exported and import should have adjusted ID width"); + + jv2xml = new jalview.project.Jalview2XML(false); + tempfile.delete(); + jv2xml.saveState(tempfile); + assertTrue(jv2xml.errorMessage == null, + "Failed to save dummy project with PCA: test broken"); + af = null; + // load again. + Desktop.instance.closeAll_actionPerformed(null); + af = new FileLoader().LoadFileWaitTillLoaded( + tempfile.getCanonicalPath(), DataSourceType.FILE); + assertFalse( + af.alignPanel.getIdPanel().getIdCanvas().isManuallyAdjusted()); + assertTrue(af.alignPanel.getAlignViewport().getIdWidth() > -1, + "New project exported and import should have adjusted ID width"); + } + }