X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fstructure%2FStructureSelectionManagerTest.java;h=a59fbdecee794cd24d8a6750e32a8c452bc09e13;hb=52324cad8ae27137e1dd32261dc55c89444029d8;hp=1ccf6f6ad793b10e4f10c32441e412312b71a5b8;hpb=5f4e1e4c330b045e9c8bce28ee132a0fca3834d8;p=jalview.git

diff --git a/test/jalview/structure/StructureSelectionManagerTest.java b/test/jalview/structure/StructureSelectionManagerTest.java
index 1ccf6f6..a59fbde 100644
--- a/test/jalview/structure/StructureSelectionManagerTest.java
+++ b/test/jalview/structure/StructureSelectionManagerTest.java
@@ -28,7 +28,7 @@ import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.gui.JvOptionPane;
-import jalview.io.FormatAdapter;
+import jalview.io.DataSourceType;
 import jalview.io.StructureFile;
 import jalview.util.MapList;
 
@@ -134,7 +134,7 @@ public class StructureSelectionManagerTest
     sm.setProcessSecondaryStructure(true);
     sm.setAddTempFacAnnot(true);
     StructureFile pmap = sm.setMapping(true, new SequenceI[] { seq },
-            new String[] { null }, "examples/1gaq.txt", FormatAdapter.FILE);
+            new String[] { null }, "examples/1gaq.txt", DataSourceType.FILE);
     assertTrue(pmap != null);
 
     assertEquals(3, pmap.getSeqs().size());
@@ -145,7 +145,7 @@ public class StructureSelectionManagerTest
     /*
      * Verify a RESNUM sequence feature in the PDBfile sequence
      */
-    SequenceFeature sf = pmap.getSeqs().get(0).getSequenceFeatures()[0];
+    SequenceFeature sf = pmap.getSeqs().get(0).getSequenceFeatures().get(0);
     assertEquals("RESNUM", sf.getType());
     assertEquals("1gaq", sf.getFeatureGroup());
     assertEquals("GLU:  19  1gaqA", sf.getDescription());
@@ -155,7 +155,7 @@ public class StructureSelectionManagerTest
      * sequence
      */
     StructureMapping map = sm.getMapping("examples/1gaq.txt")[0];
-    sf = map.sequence.getSequenceFeatures()[0];
+    sf = map.sequence.getSequenceFeatures().get(0);
     assertEquals("RESNUM", sf.getType());
     assertEquals("1gaq", sf.getFeatureGroup());
     assertEquals("ALA:   1  1gaqB", sf.getDescription());