X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fstructures%2Fmodels%2FAAStructureBindingModelTest.java;fp=test%2Fjalview%2Fstructures%2Fmodels%2FAAStructureBindingModelTest.java;h=b8f78742fce83ac2d626bf3c464d2d0d13864457;hb=52288466dd1e71946a06fd1e6ea15fa8e652c693;hp=14667607fd3f0b9f6470820d99c4d8dc6b825259;hpb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;p=jalview.git

diff --git a/test/jalview/structures/models/AAStructureBindingModelTest.java b/test/jalview/structures/models/AAStructureBindingModelTest.java
index 1466760..b8f7874 100644
--- a/test/jalview/structures/models/AAStructureBindingModelTest.java
+++ b/test/jalview/structures/models/AAStructureBindingModelTest.java
@@ -57,14 +57,13 @@ public class AAStructureBindingModelTest
   /**
    * Set up test conditions with three aligned sequences,
    */
- @BeforeMethod(alwaysRun = true)
+  @BeforeMethod(alwaysRun = true)
   public void setUp()
   {
     SequenceI seq1 = new Sequence("1YCS", "-VPSQK");
     SequenceI seq2 = new Sequence("3A6S", "MK-KLQ");
     SequenceI seq3 = new Sequence("1OOT", "SPK-AV");
-    al = new Alignment(new SequenceI[]
-    { seq1, seq2, seq3 });
+    al = new Alignment(new SequenceI[] { seq1, seq2, seq3 });
     al.setDataset(null);
 
     PDBEntry[] pdbFiles = new PDBEntry[3];
@@ -73,20 +72,17 @@ public class AAStructureBindingModelTest
     pdbFiles[2] = new PDBEntry("1OOT", "A", Type.PDB, "1OOT.pdb");
     String[][] chains = new String[3][];
     SequenceI[][] seqs = new SequenceI[3][];
-    seqs[0] = new SequenceI[]
-    { seq1 };
-    seqs[1] = new SequenceI[]
-    { seq2 };
-    seqs[2] = new SequenceI[]
-    { seq3 };
+    seqs[0] = new SequenceI[] { seq1 };
+    seqs[1] = new SequenceI[] { seq2 };
+    seqs[2] = new SequenceI[] { seq3 };
     StructureSelectionManager ssm = new StructureSelectionManager();
 
-    ssm.setMapping(new SequenceI[]
-    { seq1 }, null, PDB_1, AppletFormatAdapter.PASTE);
-    ssm.setMapping(new SequenceI[]
-    { seq2 }, null, PDB_2, AppletFormatAdapter.PASTE);
-    ssm.setMapping(new SequenceI[]
-    { seq3 }, null, PDB_3, AppletFormatAdapter.PASTE);
+    ssm.setMapping(new SequenceI[] { seq1 }, null, PDB_1,
+            AppletFormatAdapter.PASTE);
+    ssm.setMapping(new SequenceI[] { seq2 }, null, PDB_2,
+            AppletFormatAdapter.PASTE);
+    ssm.setMapping(new SequenceI[] { seq3 }, null, PDB_3,
+            AppletFormatAdapter.PASTE);
 
     testee = new AAStructureBindingModel(ssm, pdbFiles, seqs, chains, null)
     {
@@ -97,17 +93,19 @@ public class AAStructureBindingModelTest
          * fudge 'filenames' to match those generated when PDBFile parses PASTE
          * data
          */
-        return new String[]
-        { "INLINE1YCS", "INLINE3A6S", "INLINE1OOT" };
+        return new String[] { "INLINE1YCS", "INLINE3A6S", "INLINE1OOT" };
       }
+
       @Override
       public void updateColours(Object source)
       {
       }
+
       @Override
       public void releaseReferences(Object svl)
       {
       }
+
       @Override
       public void highlightAtoms(List<AtomSpec> atoms)
       {
@@ -119,7 +117,7 @@ public class AAStructureBindingModelTest
    * Verify that the method determines that columns 2, 5 and 6 of the alignment
    * are alignable in structure
    */
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testFindSuperposableResidues()
   {
     SuperposeData[] structs = new SuperposeData[al.getHeight()];
@@ -150,7 +148,7 @@ public class AAStructureBindingModelTest
     assertTrue(matched[5]);
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testFindSuperposableResidues_hiddenColumn()
   {
     SuperposeData[] structs = new SuperposeData[al.getHeight()];