X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Futil%2FComparisonTest.java;h=cef9ffc1d94806d0103546cc2da6f6b425d9a42e;hb=5221c772a071266446c5c959f34ec89c8e874201;hp=6f6841ddefecc1ae87fd9c816ff3f995fd6e9f6d;hpb=136c0793b90b72b928c4d77dc109dd5c644e00d3;p=jalview.git

diff --git a/test/jalview/util/ComparisonTest.java b/test/jalview/util/ComparisonTest.java
index 6f6841d..cef9ffc 100644
--- a/test/jalview/util/ComparisonTest.java
+++ b/test/jalview/util/ComparisonTest.java
@@ -62,8 +62,9 @@ public class ComparisonTest
   {
     SequenceI seq = new Sequence("eightypercent", "agctuAGCPV");
     assertFalse(Comparison.isNucleotide(new SequenceI[] { seq }));
-    assertFalse(Comparison.isNucleotide(new SequenceI[][] { new SequenceI[]
-    { seq } }));
+    assertFalse(
+            Comparison.isNucleotide(new SequenceI[][]
+            { new SequenceI[] { seq } }));
 
     seq = new Sequence("eightyfivepercent", "agctuAGCPVagctuAGCUV");
     assertFalse(Comparison.isNucleotide(new SequenceI[] { seq }));
@@ -85,21 +86,27 @@ public class ComparisonTest
     seq = new Sequence("DNA", "ACTugGCCAG");
     SequenceI seq2 = new Sequence("Protein", "FLIMVSPTYW");
     /*
-     * 90% DNA:
+     * 90% DNA but one protein sequence - expect false
      */
-    assertTrue(Comparison.isNucleotide(new SequenceI[] { seq, seq, seq,
-        seq, seq, seq, seq, seq, seq, seq2 }));
-    assertTrue(Comparison.isNucleotide(new SequenceI[][] {
-        new SequenceI[] { seq }, new SequenceI[] { seq, seq, seq },
-        new SequenceI[] { seq, seq, seq, seq, seq, seq2 } }));
+    assertFalse(
+            Comparison.isNucleotide(new SequenceI[]
+            { seq, seq, seq, seq, seq, seq, seq, seq, seq, seq2 }));
+    assertFalse(
+            Comparison.isNucleotide(new SequenceI[][]
+            { new SequenceI[] { seq }, new SequenceI[] { seq, seq, seq },
+                new SequenceI[]
+                { seq, seq, seq, seq, seq, seq2 } }));
     /*
-     * 80% DNA:
+     * 80% DNA but one protein sequence - Expect false
      */
-    assertFalse(Comparison.isNucleotide(new SequenceI[] { seq, seq, seq,
-        seq, seq, seq, seq, seq, seq2, seq2 }));
-    assertFalse(Comparison.isNucleotide(new SequenceI[][] { new SequenceI[]
-    { seq }, new SequenceI[] { seq, seq, seq },
-        new SequenceI[] { seq, seq, seq, seq, seq2, seq2, null } }));
+    assertFalse(
+            Comparison.isNucleotide(new SequenceI[]
+            { seq, seq, seq, seq, seq, seq, seq, seq, seq2, seq2 }));
+    assertFalse(
+            Comparison.isNucleotide(new SequenceI[][]
+            { new SequenceI[] { seq }, new SequenceI[] { seq, seq, seq },
+                new SequenceI[]
+                { seq, seq, seq, seq, seq2, seq2, null } }));
 
     seq = new Sequence("ProteinThatLooksLikeDNA", "WYATGCCTGAgtcgt");
     // 12/14 = 85.7%