X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=test%2Fjalview%2Fws%2Fseqfetcher%2FDbRefFetcherTest.java;h=6769d39d0f597fa131967b8be71aa3423603e207;hb=fbfbbe26bee37143d5279fe4d254a5a89c96b021;hp=8b223d1efb5432486347e79299cc3a663bd78189;hpb=a7634a9f5f5f691a7bff7bb05ca21a340aa2f834;p=jalview.git

diff --git a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
index 8b223d1..6769d39 100644
--- a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
+++ b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
@@ -20,12 +20,14 @@
  */
 package jalview.ws.seqfetcher;
 
+import static org.testng.Assert.assertNotEquals;
 import static org.testng.AssertJUnit.assertEquals;
 import static org.testng.AssertJUnit.assertFalse;
 import static org.testng.AssertJUnit.assertNotNull;
 import static org.testng.AssertJUnit.assertTrue;
 
 import jalview.analysis.CrossRef;
+import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.DBRefSource;
@@ -37,6 +39,7 @@ import jalview.gui.JvOptionPane;
 import jalview.util.DBRefUtils;
 import jalview.ws.DBRefFetcher;
 import jalview.ws.SequenceFetcher;
+import jalview.ws.dbsources.EBIAlfaFold;
 import jalview.ws.dbsources.Pdb;
 import jalview.ws.dbsources.Uniprot;
 
@@ -44,6 +47,7 @@ import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.List;
 
+import org.junit.Assert;
 import org.testng.annotations.AfterClass;
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
@@ -225,4 +229,29 @@ public class DbRefFetcherTest
     assertEquals(dr.get(0).getSource() + "|" + dr.get(0).getAccessionId(),
             proteinSeq.getName());
   }
+
+  /**
+   * Tests retrieval of one entry from EMBLCDS. Test is dependent on
+   * availability of network and the EMBLCDS service.
+   * 
+   * @throws Exception
+   */
+  @Test(groups = { "External" })
+  public void testAlphaFoldClien() throws Exception
+  {
+    DbSourceProxy alphafold = new EBIAlfaFold();
+    AlignmentI resp = alphafold.getSequenceRecords(alphafold.getTestQuery());
+    assertNotNull(resp);
+    assertEquals("One sequence only",resp.getHeight(), 1);
+    for (AlignmentAnnotation aa:resp.getAlignmentAnnotation()) {
+      if (aa.graph == AlignmentAnnotation.CUSTOMRENDERER)
+      {
+        assertTrue("Contact map didn't provide valid contact",resp.getContactListFor(aa, 1).getContactAt(1)!=-1d);
+        // test passes
+        return;
+      }
+    }
+    Assert.fail();
+  }
+
 }