X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=utils%2Fcheckstyle%2Fimport-control.xml;h=478966ffd49c170ef3995f912802df572c000a47;hb=3f4b01ff53be81b3a04a9893f9bd2a93dbee0a6f;hp=b41aab338db1550de4c5f52556155fbebe4a3d14;hpb=e02234276dcd45fb0d07f1a846550b1a1fcada8e;p=jalview.git

diff --git a/utils/checkstyle/import-control.xml b/utils/checkstyle/import-control.xml
index b41aab3..478966f 100644
--- a/utils/checkstyle/import-control.xml
+++ b/utils/checkstyle/import-control.xml
@@ -37,13 +37,39 @@
 		<subpackage name="datamodel">
 	    	<disallow pkg="jalview.gui"/>
 	    	<allow pkg="fr.orsay.lri.varna"/>
-			<subpackage name="xdb">
-				<subpackage name="embl">
-			    	<allow pkg="org.exolab.castor"/>
-			    </subpackage>
+			<subpackage name="xdb.embl">
+		    	<allow pkg="org.exolab.castor"/>
 		    </subpackage>
 	    </subpackage>
    		
+		<subpackage name="ext">
+			<subpackage name="ensembl">
+		    	<allow pkg="javax.ws"/>
+		    	<allow pkg="org.json"/>
+			</subpackage>
+			<subpackage name="htsjdk">
+		    	<allow pkg="htsjdk"/>
+			</subpackage>
+			<subpackage name="jmol">
+		    	<allow pkg="MCview"/>
+		    	<allow pkg="org.jmol"/>
+			</subpackage>
+			<subpackage name="paradise">
+		    	<allow pkg="org.apache"/>
+		    	<allow pkg="org.json"/>
+			</subpackage>
+			<subpackage name="rbvi">
+		    	<allow pkg="ext.edu.ucsf"/>
+		    	<allow pkg="javax.servlet"/>
+			</subpackage>
+			<subpackage name="so">
+		    	<allow pkg="org.biojava"/>
+			</subpackage>
+			<subpackage name="varna">
+		    	<allow pkg="fr.orsay"/>
+			</subpackage>
+	    </subpackage>
+   		
 		<subpackage name="fts">
 	    	<allow pkg="javax.swing"/>
 	    	<allow pkg="javax.ws"/>
@@ -68,6 +94,7 @@
 	    	<allow pkg="compbio.metadata" class="jalview.gui.WsJobParameters"/>
 	    	<allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarna"/>
 	    	<allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarnaBinding"/>
+	    	<allow pkg="org.stackoverflowusers.file" class="jalview.gui.Desktop"/>
 	    	<allow pkg="uk.ac.vamsas" class="jalview.gui.VamsasApplication"/>
 	    </subpackage>
    		
@@ -90,6 +117,9 @@
 	    	<allow pkg="uk.ac.vamsas"/>
 	    	<allow pkg="fr.orsay.lri.varna"/>
 	    	<allow pkg="MCview"/>
+			<subpackage name="vcf">
+		    	<allow pkg="htsjdk\.*" regex="true"/>
+			</subpackage>	    
 		</subpackage>	    
 		   		
 		<subpackage name="javascript">
@@ -100,9 +130,18 @@
 	    	<allow pkg="javax.servlet"/>
 		</subpackage>
 
+		<subpackage name="schemes">
+			<allow pkg="org.exolab.castor" class="jalview.schemes.ColourSchemeLoader"/>
+		</subpackage>
+
 		<subpackage name="structure">
 	    	<allow pkg="MCview"/>
 		</subpackage>
+		
+		<subpackage name="urls">
+			<allow pkg="javax.swing" class="jalview.urls.UrlLinkTableModel"/>
+			<allow pkg="org.json"/>
+		</subpackage>
 
 		<subpackage name="util">
 	    	<allow pkg="javax.swing"/>