X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=utils%2Finstall4j%2Ffile_associations_auto-install4j8.xml;h=b14d32a73de408579e9424cc25824773076c9ce5;hb=41b0e9331ac71787c1280aa1d809f54c575fbf97;hp=d37b0537850c9c07a749d7b445437ef8a7ebca2f;hpb=ebddf92d65d91801d588602b95947cee3014c757;p=jalview.git

diff --git a/utils/install4j/file_associations_auto-install4j8.xml b/utils/install4j/file_associations_auto-install4j8.xml
index d37b053..b14d32a 100644
--- a/utils/install4j/file_associations_auto-install4j8.xml
+++ b/utils/install4j/file_associations_auto-install4j8.xml
@@ -1,5 +1,5 @@
 <!-- Jalview (.jvp) BEGIN -->
-                  <action id="10000" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Jalview (.jvp) message" id="10000" customizedId="Jalview-jvp-10000-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">Jalview (.jvp)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -8,13 +8,13 @@
                     </serializedBean>
                   </action>
 
-                  <action id="10001" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Jalview (.jvp) progress bar 0" id="10001" customizedId="Jalview-jvp-10001-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="4" />
+                      <property name="percentValue" type="int" value="0" />
                     </serializedBean>
                   </action>
 
-                  <action id="10002" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvp file association">
+                  <action name="Jalview (.jvp) file association" id="10002" customizedId="Jalview-jvp-10002-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvp file association">
                     <serializedBean>
                       <property name="description" type="string">Jalview File</property>
                       <property name="extension" type="string">jvp</property>
@@ -24,9 +24,9 @@
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview+xml+zip</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -44,7 +44,7 @@
 <!-- END -->
 
 <!-- Jalview Launch (.jvl) BEGIN -->
-                  <action id="10003" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Jalview Launch (.jvl) message" id="10003" customizedId="Jalview Launch-jvl-10003-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">Jalview Launch (.jvl)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -53,13 +53,13 @@
                     </serializedBean>
                   </action>
 
-                  <action id="10004" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Jalview Launch (.jvl) progress bar 4" id="10004" customizedId="Jalview Launch-jvl-10004-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="8" />
+                      <property name="percentValue" type="int" value="4" />
                     </serializedBean>
                   </action>
 
-                  <action id="10005" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvl file association">
+                  <action name="Jalview Launch (.jvl) file association" id="10005" customizedId="Jalview Launch-jvl-10005-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvl file association">
                     <serializedBean>
                       <property name="description" type="string">Jalview Launch File</property>
                       <property name="extension" type="string">jvl</property>
@@ -69,9 +69,9 @@
                           <string>Jalview-Launch.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-jvl+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -88,42 +88,42 @@
                   </action>
 <!-- END -->
 
-<!-- AMSA (.amsa) BEGIN -->
-                  <action id="10006" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- CIF (.cif) BEGIN -->
+                  <action name="CIF (.cif) message" id="10006" customizedId="CIF-cif-10006-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">AMSA (.amsa)</property>
+                      <property name="detailMessage" type="string">CIF (.cif)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10007" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="CIF (.cif) progress bar 8" id="10007" customizedId="CIF-cif-10007-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="13" />
+                      <property name="percentValue" type="int" value="8" />
                     </serializedBean>
                   </action>
 
-                  <action id="10008" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .amsa file association">
+                  <action name="CIF (.cif) file association" id="10008" customizedId="CIF-cif-10008-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .cif file association">
                     <serializedBean>
-                      <property name="description" type="string">AMSA File</property>
-                      <property name="extension" type="string">amsa</property>
+                      <property name="description" type="string">CIF File</property>
+                      <property name="extension" type="string">cif</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-amsa+txt</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="VIEWER" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="false" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-amsa+txt</property>
+                      <property name="unixMimeType" type="string">chemical/x-cif</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -133,42 +133,42 @@
                   </action>
 <!-- END -->
 
-<!-- Jalview Annotations (.annotations, .jvannotations) BEGIN -->
-                  <action id="10009" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- mmCIF (.mcif, .mmcif) BEGIN -->
+                  <action name="mmCIF (.mcif, .mmcif) message" id="10009" customizedId="mmCIF-mcif,mmcif-10009-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Jalview Annotations (.annotations, .jvannotations)</property>
+                      <property name="detailMessage" type="string">mmCIF (.mcif, .mmcif)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10010" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="mmCIF (.mcif, .mmcif) progress bar 13" id="10010" customizedId="mmCIF-mcif,mmcif-10010-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="17" />
+                      <property name="percentValue" type="int" value="13" />
                     </serializedBean>
                   </action>
 
-                  <action id="10011" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .annotations,jvannotations file association">
+                  <action name="mmCIF (.mcif, .mmcif) file association" id="10011" customizedId="mmCIF-mcif,mmcif-10011-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mcif,mmcif file association">
                     <serializedBean>
-                      <property name="description" type="string">Jalview Annotations File</property>
-                      <property name="extension" type="string">annotations,jvannotations</property>
+                      <property name="description" type="string">mmCIF File</property>
+                      <property name="extension" type="string">mcif,mmcif</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-annotations+text</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="VIEWER" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="false" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-annotations+text</property>
+                      <property name="unixMimeType" type="string">chemical/x-mmcif</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -178,42 +178,42 @@
                   </action>
 <!-- END -->
 
-<!-- BioJSON (.biojson) BEGIN -->
-                  <action id="10012" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- PDB (.ent, .pdb) BEGIN -->
+                  <action name="PDB (.ent, .pdb) message" id="10012" customizedId="PDB-ent,pdb-10012-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">BioJSON (.biojson)</property>
+                      <property name="detailMessage" type="string">PDB (.ent, .pdb)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10013" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="PDB (.ent, .pdb) progress bar 17" id="10013" customizedId="PDB-ent,pdb-10013-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="21" />
+                      <property name="percentValue" type="int" value="17" />
                     </serializedBean>
                   </action>
 
-                  <action id="10014" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .biojson file association">
+                  <action name="PDB (.ent, .pdb) file association" id="10014" customizedId="PDB-ent,pdb-10014-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .ent,pdb file association">
                     <serializedBean>
-                      <property name="description" type="string">BioJSON File</property>
-                      <property name="extension" type="string">biojson</property>
+                      <property name="description" type="string">PDB File</property>
+                      <property name="extension" type="string">ent,pdb</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-biojson+json</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="VIEWER" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="false" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-biojson+json</property>
+                      <property name="unixMimeType" type="string">chemical/x-pdb</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -223,42 +223,42 @@
                   </action>
 <!-- END -->
 
-<!-- BLC (.blc) BEGIN -->
-                  <action id="10015" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- AMSA (.amsa) BEGIN -->
+                  <action name="AMSA (.amsa) message" id="10015" customizedId="AMSA-amsa-10015-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">BLC (.blc)</property>
+                      <property name="detailMessage" type="string">AMSA (.amsa)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10016" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="AMSA (.amsa) progress bar 21" id="10016" customizedId="AMSA-amsa-10016-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="26" />
+                      <property name="percentValue" type="int" value="21" />
                     </serializedBean>
                   </action>
 
-                  <action id="10017" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .blc file association">
+                  <action name="AMSA (.amsa) file association" id="10017" customizedId="AMSA-amsa-10017-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .amsa file association">
                     <serializedBean>
-                      <property name="description" type="string">BLC File</property>
-                      <property name="extension" type="string">blc</property>
+                      <property name="description" type="string">AMSA File</property>
+                      <property name="extension" type="string">amsa</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-blc+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-blc+txt</property>
+                      <property name="unixMimeType" type="string">application/x-amsa+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -268,42 +268,42 @@
                   </action>
 <!-- END -->
 
-<!-- Clustal (.aln) BEGIN -->
-                  <action id="10018" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Jalview Annotations (.annotations, .jvannotations) BEGIN -->
+                  <action name="Jalview Annotations (.annotations, .jvannotations) message" id="10018" customizedId="Jalview Annotations-annotations,jvannotations-10018-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Clustal (.aln)</property>
+                      <property name="detailMessage" type="string">Jalview Annotations (.annotations, .jvannotations)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10019" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Jalview Annotations (.annotations, .jvannotations) progress bar 26" id="10019" customizedId="Jalview Annotations-annotations,jvannotations-10019-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="30" />
+                      <property name="percentValue" type="int" value="26" />
                     </serializedBean>
                   </action>
 
-                  <action id="10020" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .aln file association">
+                  <action name="Jalview Annotations (.annotations, .jvannotations) file association" id="10020" customizedId="Jalview Annotations-annotations,jvannotations-10020-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .annotations,jvannotations file association">
                     <serializedBean>
-                      <property name="description" type="string">Clustal File</property>
-                      <property name="extension" type="string">aln</property>
+                      <property name="description" type="string">Jalview Annotations File</property>
+                      <property name="extension" type="string">annotations,jvannotations</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-clustal+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-clustal+txt</property>
+                      <property name="unixMimeType" type="string">application/x-jalview-annotations+text</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -313,42 +313,42 @@
                   </action>
 <!-- END -->
 
-<!-- Fasta (.fa, .fasta) BEGIN -->
-                  <action id="10021" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- BioJSON (.biojson) BEGIN -->
+                  <action name="BioJSON (.biojson) message" id="10021" customizedId="BioJSON-biojson-10021-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Fasta (.fa, .fasta)</property>
+                      <property name="detailMessage" type="string">BioJSON (.biojson)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10022" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="BioJSON (.biojson) progress bar 30" id="10022" customizedId="BioJSON-biojson-10022-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="34" />
+                      <property name="percentValue" type="int" value="30" />
                     </serializedBean>
                   </action>
 
-                  <action id="10023" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .fa,fasta file association">
+                  <action name="BioJSON (.biojson) file association" id="10023" customizedId="BioJSON-biojson-10023-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .biojson file association">
                     <serializedBean>
-                      <property name="description" type="string">Fasta File</property>
-                      <property name="extension" type="string">fa,fasta</property>
+                      <property name="description" type="string">BioJSON File</property>
+                      <property name="extension" type="string">biojson</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-fasta+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-fasta+txt</property>
+                      <property name="unixMimeType" type="string">application/x-jalview-biojson+json</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -358,42 +358,42 @@
                   </action>
 <!-- END -->
 
-<!-- Jalview Features (.features, .jvfeatures) BEGIN -->
-                  <action id="10024" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- BLC (.blc) BEGIN -->
+                  <action name="BLC (.blc) message" id="10024" customizedId="BLC-blc-10024-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Jalview Features (.features, .jvfeatures)</property>
+                      <property name="detailMessage" type="string">BLC (.blc)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10025" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="BLC (.blc) progress bar 34" id="10025" customizedId="BLC-blc-10025-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="39" />
+                      <property name="percentValue" type="int" value="34" />
                     </serializedBean>
                   </action>
 
-                  <action id="10026" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .features,jvfeatures file association">
+                  <action name="BLC (.blc) file association" id="10026" customizedId="BLC-blc-10026-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .blc file association">
                     <serializedBean>
-                      <property name="description" type="string">Jalview Features File</property>
-                      <property name="extension" type="string">features,jvfeatures</property>
+                      <property name="description" type="string">BLC File</property>
+                      <property name="extension" type="string">blc</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-features+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-features+text</property>
+                      <property name="unixMimeType" type="string">application/x-blc+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -403,42 +403,42 @@
                   </action>
 <!-- END -->
 
-<!-- Generic Features Format v2 (.gff2) BEGIN -->
-                  <action id="10027" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Clustal (.aln) BEGIN -->
+                  <action name="Clustal (.aln) message" id="10027" customizedId="Clustal-aln-10027-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Generic Features Format v2 (.gff2)</property>
+                      <property name="detailMessage" type="string">Clustal (.aln)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10028" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Clustal (.aln) progress bar 39" id="10028" customizedId="Clustal-aln-10028-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="43" />
+                      <property name="percentValue" type="int" value="39" />
                     </serializedBean>
                   </action>
 
-                  <action id="10029" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff2 file association">
+                  <action name="Clustal (.aln) file association" id="10029" customizedId="Clustal-aln-10029-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .aln file association">
                     <serializedBean>
-                      <property name="description" type="string">Generic Features Format v2 File</property>
-                      <property name="extension" type="string">gff2</property>
+                      <property name="description" type="string">Clustal File</property>
+                      <property name="extension" type="string">aln</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-gff2+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-gff2+txt</property>
+                      <property name="unixMimeType" type="string">application/x-clustal+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -448,42 +448,42 @@
                   </action>
 <!-- END -->
 
-<!-- Generic Features Format v3 (.gff3) BEGIN -->
-                  <action id="10030" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Fasta (.fa, .fasta) BEGIN -->
+                  <action name="Fasta (.fa, .fasta) message" id="10030" customizedId="Fasta-fa,fasta-10030-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Generic Features Format v3 (.gff3)</property>
+                      <property name="detailMessage" type="string">Fasta (.fa, .fasta)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10031" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Fasta (.fa, .fasta) progress bar 43" id="10031" customizedId="Fasta-fa,fasta-10031-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="47" />
+                      <property name="percentValue" type="int" value="43" />
                     </serializedBean>
                   </action>
 
-                  <action id="10032" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff3 file association">
+                  <action name="Fasta (.fa, .fasta) file association" id="10032" customizedId="Fasta-fa,fasta-10032-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .fa,fasta file association">
                     <serializedBean>
-                      <property name="description" type="string">Generic Features Format v3 File</property>
-                      <property name="extension" type="string">gff3</property>
+                      <property name="description" type="string">Fasta File</property>
+                      <property name="extension" type="string">fa,fasta</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-gff3+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-gff3+txt</property>
+                      <property name="unixMimeType" type="string">application/x-fasta+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -493,42 +493,42 @@
                   </action>
 <!-- END -->
 
-<!-- JnetFile (.concise, .jnet) BEGIN -->
-                  <action id="10033" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Jalview Features (.features, .jvfeatures) BEGIN -->
+                  <action name="Jalview Features (.features, .jvfeatures) message" id="10033" customizedId="Jalview Features-features,jvfeatures-10033-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">JnetFile (.concise, .jnet)</property>
+                      <property name="detailMessage" type="string">Jalview Features (.features, .jvfeatures)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10034" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Jalview Features (.features, .jvfeatures) progress bar 47" id="10034" customizedId="Jalview Features-features,jvfeatures-10034-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="52" />
+                      <property name="percentValue" type="int" value="47" />
                     </serializedBean>
                   </action>
 
-                  <action id="10035" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .concise,jnet file association">
+                  <action name="Jalview Features (.features, .jvfeatures) file association" id="10035" customizedId="Jalview Features-features,jvfeatures-10035-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .features,jvfeatures file association">
                     <serializedBean>
-                      <property name="description" type="string">JnetFile File</property>
-                      <property name="extension" type="string">concise,jnet</property>
+                      <property name="description" type="string">Jalview Features File</property>
+                      <property name="extension" type="string">features,jvfeatures</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-jnet+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-jnet+text</property>
+                      <property name="unixMimeType" type="string">application/x-jalview-features+text</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -538,42 +538,42 @@
                   </action>
 <!-- END -->
 
-<!-- mmCIF (.cif) BEGIN -->
-                  <action id="10036" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Generic Features Format v2 (.gff2) BEGIN -->
+                  <action name="Generic Features Format v2 (.gff2) message" id="10036" customizedId="Generic Features Format v2-gff2-10036-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">mmCIF (.cif)</property>
+                      <property name="detailMessage" type="string">Generic Features Format v2 (.gff2)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10037" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Generic Features Format v2 (.gff2) progress bar 52" id="10037" customizedId="Generic Features Format v2-gff2-10037-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="56" />
+                      <property name="percentValue" type="int" value="52" />
                     </serializedBean>
                   </action>
 
-                  <action id="10038" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .cif file association">
+                  <action name="Generic Features Format v2 (.gff2) file association" id="10038" customizedId="Generic Features Format v2-gff2-10038-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff2 file association">
                     <serializedBean>
-                      <property name="description" type="string">mmCIF File</property>
-                      <property name="extension" type="string">cif</property>
+                      <property name="description" type="string">Generic Features Format v2 File</property>
+                      <property name="extension" type="string">gff2</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-cif</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">chemical/x-cif</property>
+                      <property name="unixMimeType" type="string">application/x-gff2+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -583,42 +583,42 @@
                   </action>
 <!-- END -->
 
-<!-- mmCIF (.mcif, .mmcif) BEGIN -->
-                  <action id="10039" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Generic Features Format v3 (.gff3) BEGIN -->
+                  <action name="Generic Features Format v3 (.gff3) message" id="10039" customizedId="Generic Features Format v3-gff3-10039-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">mmCIF (.mcif, .mmcif)</property>
+                      <property name="detailMessage" type="string">Generic Features Format v3 (.gff3)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10040" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Generic Features Format v3 (.gff3) progress bar 56" id="10040" customizedId="Generic Features Format v3-gff3-10040-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="60" />
+                      <property name="percentValue" type="int" value="56" />
                     </serializedBean>
                   </action>
 
-                  <action id="10041" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mcif,mmcif file association">
+                  <action name="Generic Features Format v3 (.gff3) file association" id="10041" customizedId="Generic Features Format v3-gff3-10041-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff3 file association">
                     <serializedBean>
-                      <property name="description" type="string">mmCIF File</property>
-                      <property name="extension" type="string">mcif,mmcif</property>
+                      <property name="description" type="string">Generic Features Format v3 File</property>
+                      <property name="extension" type="string">gff3</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-mcif</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">chemical/x-mcif</property>
+                      <property name="unixMimeType" type="string">application/x-gff3+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -628,42 +628,42 @@
                   </action>
 <!-- END -->
 
-<!-- MSF (.msf) BEGIN -->
-                  <action id="10042" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- JnetFile (.concise, .jnet) BEGIN -->
+                  <action name="JnetFile (.concise, .jnet) message" id="10042" customizedId="JnetFile-concise,jnet-10042-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">MSF (.msf)</property>
+                      <property name="detailMessage" type="string">JnetFile (.concise, .jnet)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10043" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="JnetFile (.concise, .jnet) progress bar 60" id="10043" customizedId="JnetFile-concise,jnet-10043-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="65" />
+                      <property name="percentValue" type="int" value="60" />
                     </serializedBean>
                   </action>
 
-                  <action id="10044" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .msf file association">
+                  <action name="JnetFile (.concise, .jnet) file association" id="10044" customizedId="JnetFile-concise,jnet-10044-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .concise,jnet file association">
                     <serializedBean>
-                      <property name="description" type="string">MSF File</property>
-                      <property name="extension" type="string">msf</property>
+                      <property name="description" type="string">JnetFile File</property>
+                      <property name="extension" type="string">concise,jnet</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-msf+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-msf+txt</property>
+                      <property name="unixMimeType" type="string">application/x-jalview-jnet+text</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -673,42 +673,42 @@
                   </action>
 <!-- END -->
 
-<!-- PDB (.ent, .pdb) BEGIN -->
-                  <action id="10045" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- MSF (.msf) BEGIN -->
+                  <action name="MSF (.msf) message" id="10045" customizedId="MSF-msf-10045-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">PDB (.ent, .pdb)</property>
+                      <property name="detailMessage" type="string">MSF (.msf)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
 
-                  <action id="10046" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="MSF (.msf) progress bar 65" id="10046" customizedId="MSF-msf-10046-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="69" />
+                      <property name="percentValue" type="int" value="65" />
                     </serializedBean>
                   </action>
 
-                  <action id="10047" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .ent,pdb file association">
+                  <action name="MSF (.msf) file association" id="10047" customizedId="MSF-msf-10047-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .msf file association">
                     <serializedBean>
-                      <property name="description" type="string">PDB File</property>
-                      <property name="extension" type="string">ent,pdb</property>
+                      <property name="description" type="string">MSF File</property>
+                      <property name="extension" type="string">msf</property>
                       <property name="launcherId" type="string">737</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-pdb</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">chemical/x-pdb</property>
+                      <property name="unixMimeType" type="string">application/x-msf+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -719,7 +719,7 @@
 <!-- END -->
 
 <!-- PFAM (.pfam) BEGIN -->
-                  <action id="10048" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="PFAM (.pfam) message" id="10048" customizedId="PFAM-pfam-10048-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">PFAM (.pfam)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -728,13 +728,13 @@
                     </serializedBean>
                   </action>
 
-                  <action id="10049" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="PFAM (.pfam) progress bar 69" id="10049" customizedId="PFAM-pfam-10049-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="73" />
+                      <property name="percentValue" type="int" value="69" />
                     </serializedBean>
                   </action>
 
-                  <action id="10050" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pfam file association">
+                  <action name="PFAM (.pfam) file association" id="10050" customizedId="PFAM-pfam-10050-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pfam file association">
                     <serializedBean>
                       <property name="description" type="string">PFAM File</property>
                       <property name="extension" type="string">pfam</property>
@@ -744,9 +744,9 @@
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-pfam+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -764,7 +764,7 @@
 <!-- END -->
 
 <!-- PHYLIP (.phy) BEGIN -->
-                  <action id="10051" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="PHYLIP (.phy) message" id="10051" customizedId="PHYLIP-phy-10051-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">PHYLIP (.phy)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -773,13 +773,13 @@
                     </serializedBean>
                   </action>
 
-                  <action id="10052" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="PHYLIP (.phy) progress bar 73" id="10052" customizedId="PHYLIP-phy-10052-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="78" />
+                      <property name="percentValue" type="int" value="73" />
                     </serializedBean>
                   </action>
 
-                  <action id="10053" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .phy file association">
+                  <action name="PHYLIP (.phy) file association" id="10053" customizedId="PHYLIP-phy-10053-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .phy file association">
                     <serializedBean>
                       <property name="description" type="string">PHYLIP File</property>
                       <property name="extension" type="string">phy</property>
@@ -789,9 +789,9 @@
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-phylip+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -809,7 +809,7 @@
 <!-- END -->
 
 <!-- PileUp (.pileup) BEGIN -->
-                  <action id="10054" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="PileUp (.pileup) message" id="10054" customizedId="PileUp-pileup-10054-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">PileUp (.pileup)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -818,13 +818,13 @@
                     </serializedBean>
                   </action>
 
-                  <action id="10055" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="PileUp (.pileup) progress bar 78" id="10055" customizedId="PileUp-pileup-10055-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="82" />
+                      <property name="percentValue" type="int" value="78" />
                     </serializedBean>
                   </action>
 
-                  <action id="10056" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pileup file association">
+                  <action name="PileUp (.pileup) file association" id="10056" customizedId="PileUp-pileup-10056-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pileup file association">
                     <serializedBean>
                       <property name="description" type="string">PileUp File</property>
                       <property name="extension" type="string">pileup</property>
@@ -834,9 +834,9 @@
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-pileup+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -854,7 +854,7 @@
 <!-- END -->
 
 <!-- PIR (.pir) BEGIN -->
-                  <action id="10057" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="PIR (.pir) message" id="10057" customizedId="PIR-pir-10057-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">PIR (.pir)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -863,13 +863,13 @@
                     </serializedBean>
                   </action>
 
-                  <action id="10058" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="PIR (.pir) progress bar 82" id="10058" customizedId="PIR-pir-10058-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="86" />
+                      <property name="percentValue" type="int" value="82" />
                     </serializedBean>
                   </action>
 
-                  <action id="10059" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pir file association">
+                  <action name="PIR (.pir) file association" id="10059" customizedId="PIR-pir-10059-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pir file association">
                     <serializedBean>
                       <property name="description" type="string">PIR File</property>
                       <property name="extension" type="string">pir</property>
@@ -879,9 +879,9 @@
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-pir+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -899,7 +899,7 @@
 <!-- END -->
 
 <!-- RNAML (.rnaml) BEGIN -->
-                  <action id="10060" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="RNAML (.rnaml) message" id="10060" customizedId="RNAML-rnaml-10060-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">RNAML (.rnaml)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -908,13 +908,13 @@
                     </serializedBean>
                   </action>
 
-                  <action id="10061" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="RNAML (.rnaml) progress bar 86" id="10061" customizedId="RNAML-rnaml-10061-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="91" />
+                      <property name="percentValue" type="int" value="86" />
                     </serializedBean>
                   </action>
 
-                  <action id="10062" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .rnaml file association">
+                  <action name="RNAML (.rnaml) file association" id="10062" customizedId="RNAML-rnaml-10062-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .rnaml file association">
                     <serializedBean>
                       <property name="description" type="string">RNAML File</property>
                       <property name="extension" type="string">rnaml</property>
@@ -924,9 +924,9 @@
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/rnaml+xml</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -944,7 +944,7 @@
 <!-- END -->
 
 <!-- Substitution Matrix (.mat) BEGIN -->
-                  <action id="10063" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Substitution Matrix (.mat) message" id="10063" customizedId="Substitution Matrix-mat-10063-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">Substitution Matrix (.mat)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -953,13 +953,13 @@
                     </serializedBean>
                   </action>
 
-                  <action id="10064" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Substitution Matrix (.mat) progress bar 91" id="10064" customizedId="Substitution Matrix-mat-10064-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="95" />
+                      <property name="percentValue" type="int" value="91" />
                     </serializedBean>
                   </action>
 
-                  <action id="10065" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mat file association">
+                  <action name="Substitution Matrix (.mat) file association" id="10065" customizedId="Substitution Matrix-mat-10065-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mat file association">
                     <serializedBean>
                       <property name="description" type="string">Substitution Matrix File</property>
                       <property name="extension" type="string">mat</property>
@@ -969,9 +969,9 @@
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-scorematrix+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -989,7 +989,7 @@
 <!-- END -->
 
 <!-- Stockholm (.stk, .sto) BEGIN -->
-                  <action id="10066" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Stockholm (.stk, .sto) message" id="10066" customizedId="Stockholm-stk,sto-10066-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">Stockholm (.stk, .sto)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -998,13 +998,13 @@
                     </serializedBean>
                   </action>
 
-                  <action id="10067" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Stockholm (.stk, .sto) progress bar 95" id="10067" customizedId="Stockholm-stk,sto-10067-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="100" />
+                      <property name="percentValue" type="int" value="95" />
                     </serializedBean>
                   </action>
 
-                  <action id="10068" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .stk,sto file association">
+                  <action name="Stockholm (.stk, .sto) file association" id="10068" customizedId="Stockholm-stk,sto-10068-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .stk,sto file association">
                     <serializedBean>
                       <property name="description" type="string">Stockholm File</property>
                       <property name="extension" type="string">stk,sto</property>
@@ -1014,9 +1014,9 @@
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-stockholm+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">