X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=webservices%2Fcompbio%2Fws%2Fclient%2FServicesUtil.java;h=70840282442770b84ba526ce10e055864791f337;hb=b2a2fdc2bd95a64b3908d8ea2f31270b6c7199d3;hp=08b81316c016c77403a2097ae8b37ea444d11a35;hpb=5096d8e1ac6c0573e12aa5c0207a3b8eada0bbf3;p=jabaws.git

diff --git a/webservices/compbio/ws/client/ServicesUtil.java b/webservices/compbio/ws/client/ServicesUtil.java
index 08b8131..7084028 100644
--- a/webservices/compbio/ws/client/ServicesUtil.java
+++ b/webservices/compbio/ws/client/ServicesUtil.java
@@ -5,6 +5,7 @@ import java.io.File;
 import compbio.engine.client.ConfExecutable;
 import compbio.engine.client.Executable;
 import compbio.runner.conservation.AACon;
+import compbio.runner.predictors.Jpred;
 import compbio.runner.disorder.Disembl;
 import compbio.runner.disorder.GlobPlot;
 import compbio.runner.disorder.IUPred;
@@ -15,6 +16,7 @@ import compbio.runner.msa.Mafft;
 import compbio.runner.msa.Muscle;
 import compbio.runner.msa.Probcons;
 import compbio.runner.msa.Tcoffee;
+import compbio.runner.structure.RNAalifold;
 
 public class ServicesUtil {
 
@@ -33,6 +35,8 @@ public class ServicesUtil {
 		switch (service) {
 			case AAConWS :
 				return AACon.class;
+			case JpredWS :
+				return Jpred.class;
 			case ClustalOWS :
 				return ClustalO.class;
 			case ClustalWS :
@@ -53,15 +57,14 @@ public class ServicesUtil {
 				return Jronn.class;
 			case IUPredWS :
 				return IUPred.class;
+			case RNAalifoldWS :
+				return RNAalifold.class;
 			default :
-				throw new RuntimeException(
-						"Unknown web service implementation class for service: "
-								+ service);
+				throw new RuntimeException("Unknown web service implementation class for service: " + service);
 		}
 	}
 
-	public static Class<? extends Executable<?>> getRunnerByJobDirectory(
-			File jobdir) {
+	public static Class<? extends Executable<?>> getRunnerByJobDirectory(File jobdir) {
 		Services service = getServiceByRunnerName(getRunnerNameByJobDirectory(jobdir));
 		return getServiceImpl(service);
 	}
@@ -82,8 +85,7 @@ public class ServicesUtil {
 
 	private static Services getServiceByRunnerName(String name) {
 		for (Services service : Services.values()) {
-			String runnerName = getServiceImpl(service).getSimpleName()
-					.toLowerCase();
+			String runnerName = getServiceImpl(service).getSimpleName().toLowerCase();
 			name = name.trim().toLowerCase();
 			if (name.startsWith(runnerName)) {
 				return service;