X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=webservices%2Fcompbio%2Fws%2Fserver%2FAAConWS.java;h=1ffbbf342a735d5e4bf30e4ee7af941fcb352a47;hb=021b24f125d8b1e8390e99b4a835469dabdd7be1;hp=095bc4ede36e4669182c60a20c8329cf1024c8d0;hpb=9d860c3793c6812f643caa01fc80a0036fa3fe2b;p=jabaws.git

diff --git a/webservices/compbio/ws/server/AAConWS.java b/webservices/compbio/ws/server/AAConWS.java
index 095bc4e..1ffbbf3 100644
--- a/webservices/compbio/ws/server/AAConWS.java
+++ b/webservices/compbio/ws/server/AAConWS.java
@@ -51,10 +51,12 @@ public class AAConWS implements SequenceAnnotation<AACon> {
 	private static final PresetManager<AACon> aaconPresets = Util
 			.getPresets(AACon.class);
 
+	private static final LimitsManager<AACon> limitMan = compbio.engine.client.Util
+			.getLimits(new AACon().getType());
+
 	ConfiguredExecutable<AACon> init(List<FastaSequence> sequences)
 			throws JobSubmissionException {
 		AACon aacon = new AACon();
-		aacon.setInput("fasta.in").setOutput("aacon.out");
 		return Configurator.configureExecutable(aacon, sequences);
 	}
 
@@ -81,12 +83,16 @@ public class AAConWS implements SequenceAnnotation<AACon> {
 
 	@Override
 	public Limit<AACon> getLimit(String presetName) {
-		return new AACon().getLimit(presetName);
+		if (limitMan == null) {
+			// Limit is not defined
+			return null;
+		}
+		return limitMan.getLimitByName(presetName);
 	}
 
 	@Override
 	public LimitsManager<AACon> getLimits() {
-		return new AACon().getLimits();
+		return limitMan;
 	}
 
 	@Override