X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=website%2Fdm_javadoc%2Findex-files%2Findex-1.html;h=a97515510ae6c37f2521e82f9cda8f623479b166;hb=1178f388e4d4e64387704a751fd9c77ccb773a27;hp=d6d9139f30edeb00d30d6685df813b8f32f7a370;hpb=14a41b0acd5d808ae1cdd8ecc82c85b4d3329b72;p=jabaws.git diff --git a/website/dm_javadoc/index-files/index-1.html b/website/dm_javadoc/index-files/index-1.html index d6d9139..a975155 100644 --- a/website/dm_javadoc/index-files/index-1.html +++ b/website/dm_javadoc/index-files/index-1.html @@ -2,12 +2,12 @@ - + A-Index - + @@ -85,9 +85,6 @@ function windowTitle()
AA - Static variable in class compbio.data.sequence.SequenceUtil
Valid Amino acids -
addAnnotation(T, ArrayList<Float>) - -Method in class compbio.data.sequence.MultiAnnotatedSequence -
 
addOption(Option<T>) - Method in class compbio.metadata.RunnerConfig
Adds Option to the internal list of options @@ -121,16 +118,7 @@ Static variable in class compbio.data.sequence.AMBIGUOUS_NUCLEOTIDE - Static variable in class compbio.data.sequence.SequenceUtil
Ambiguous nucleotide -
analize(List<FastaSequence>) - -Method in interface compbio.data.msa.Annotation -
Analyse the sequences. -
AnnotatedSequence - Class in compbio.data.sequence
 
AnnotatedSequence(String, String, float[]) - -Constructor for class compbio.data.sequence.AnnotatedSequence -
  -
AnnotatedSequence(FastaSequence, float[]) - -Constructor for class compbio.data.sequence.AnnotatedSequence -
  -
Annotation<T> - Interface in compbio.data.msa
Interface for tools that results to one or more annotation to sequence(s)
Argument<T> - Interface in compbio.metadata
An unmodifiable view for the options and parameters, with one exception - it +
Argument<T> - Interface in compbio.metadata
An unmodifiable view for the options and parameters, with one exception - it allows to set a value