X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=website%2Fdm_javadoc%2Findex-files%2Findex-1.html;h=a97515510ae6c37f2521e82f9cda8f623479b166;hb=1178f388e4d4e64387704a751fd9c77ccb773a27;hp=d6d9139f30edeb00d30d6685df813b8f32f7a370;hpb=14a41b0acd5d808ae1cdd8ecc82c85b4d3329b72;p=jabaws.git
diff --git a/website/dm_javadoc/index-files/index-1.html b/website/dm_javadoc/index-files/index-1.html
index d6d9139..a975155 100644
--- a/website/dm_javadoc/index-files/index-1.html
+++ b/website/dm_javadoc/index-files/index-1.html
@@ -2,12 +2,12 @@
-
+
A-Index
-
+
@@ -85,9 +85,6 @@ function windowTitle()
AA -
Static variable in class compbio.data.sequence.SequenceUtil
Valid Amino acids
- addAnnotation(T, ArrayList<Float>) -
-Method in class compbio.data.sequence.MultiAnnotatedSequence
-
addOption(Option<T>) -
Method in class compbio.metadata.RunnerConfig
Adds Option to the internal list of options
@@ -121,16 +118,7 @@ Static variable in class compbio.data.sequence.AMBIGUOUS_NUCLEOTIDE -
Static variable in class compbio.data.sequence.SequenceUtil
Ambiguous nucleotide
- analize(List<FastaSequence>) -
-Method in interface compbio.data.msa.Annotation
-Analyse the sequences.
- AnnotatedSequence - Class in compbio.data.sequence AnnotatedSequence(String, String, float[]) -
-Constructor for class compbio.data.sequence.AnnotatedSequence
-
- AnnotatedSequence(FastaSequence, float[]) -
-Constructor for class compbio.data.sequence.AnnotatedSequence
-
- Annotation <T > - Interface in compbio.data.msa Interface for tools that results to one or more annotation to sequence(s) Argument <T > - Interface in compbio.metadata An unmodifiable view for the options and parameters, with one exception - it
+ Argument <T > - Interface in compbio.metadata An unmodifiable view for the options and parameters, with one exception - it
allows to set a value