X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=website%2Fdm_javadoc%2Findex-files%2Findex-20.html;h=3ca94b116b3a1f17948ca7770fd4b7869e555766;hb=faac303bf9ad8c17b71a55d23b7a2c0a9e6e2efa;hp=389af8b1960666cae2302b2beff2afa9778f9899;hpb=02ace2e4cf6d29a70be3dd799f84e3f14333cdbb;p=jabaws.git

diff --git a/website/dm_javadoc/index-files/index-20.html b/website/dm_javadoc/index-files/index-20.html
index 389af8b..3ca94b1 100644
--- a/website/dm_javadoc/index-files/index-20.html
+++ b/website/dm_javadoc/index-files/index-20.html
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_21) on Wed Nov 24 12:17:19 GMT 2010 -->
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:08:25 GMT 2011 -->
 <TITLE>
 W-Index
 </TITLE>
 
-<META NAME="date" CONTENT="2010-11-24">
+<META NAME="date" CONTENT="2011-12-07">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">
 
@@ -85,7 +85,10 @@ function windowTitle()
 <DT><A HREF="../compbio/data/sequence/SequenceUtil.html#WHITE_SPACE"><B>WHITE_SPACE</B></A> - 
 Static variable in class compbio.data.sequence.<A HREF="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A>
 <DD>A whitespace character: [\t\n\x0B\f\r]
-<DT><A HREF="../compbio/data/sequence/ClustalAlignmentUtil.html#writeClustalAlignment(java.io.OutputStream, compbio.data.sequence.Alignment)"><B>writeClustalAlignment(OutputStream, Alignment)</B></A> - 
+<DT><A HREF="../compbio/data/sequence/Score.html#write(java.util.TreeSet, java.io.Writer)"><B>write(TreeSet&lt;Score&gt;, Writer)</B></A> - 
+Static method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A>
+<DD>Outputs the List of Score objects into the Output stream.
+<DT><A HREF="../compbio/data/sequence/ClustalAlignmentUtil.html#writeClustalAlignment(java.io.Writer, compbio.data.sequence.Alignment)"><B>writeClustalAlignment(Writer, Alignment)</B></A> - 
 Static method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence">ClustalAlignmentUtil</A>
 <DD>Write Clustal formatted alignment Limitations: does not record the
  consensus.
@@ -99,6 +102,12 @@ Static method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/S
 <DT><A HREF="../compbio/data/sequence/SequenceUtil.html#writeFastaKeepTheStream(java.io.OutputStream, java.util.List, int)"><B>writeFastaKeepTheStream(OutputStream, List&lt;FastaSequence&gt;, int)</B></A> - 
 Static method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A>
 <DD>&nbsp;
+<DT><A HREF="../compbio/data/sequence/ScoreManager.ScoreHolder.html#writeOut(java.io.Writer)"><B>writeOut(Writer)</B></A> - 
+Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence">ScoreManager.ScoreHolder</A>
+<DD>&nbsp;
+<DT><A HREF="../compbio/data/sequence/ScoreManager.html#writeOut(java.io.Writer)"><B>writeOut(Writer)</B></A> - 
+Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A>
+<DD>&nbsp;
 <DT><A HREF="../compbio/metadata/WrongParameterException.html" title="class in compbio.metadata"><B>WrongParameterException</B></A> - Exception in <A HREF="../compbio/metadata/package-summary.html">compbio.metadata</A><DD>WrongParameterException is thrown wherever the <A HREF="../compbio/metadata/RunnerConfig.html" title="class in compbio.metadata"><CODE>RunnerConfig</CODE></A> object
  does not match the actual runnable or then attempting to set the value of
  <A HREF="../compbio/metadata/Argument.html" title="interface in compbio.metadata"><CODE>Argument</CODE></A> to invalid value.<DT><A HREF="../compbio/metadata/WrongParameterException.html#WrongParameterException(compbio.metadata.Option)"><B>WrongParameterException(Option&lt;?&gt;)</B></A> - 
@@ -113,9 +122,12 @@ Constructor for exception compbio.metadata.<A HREF="../compbio/metadata/WrongPar
 <DT><A HREF="../compbio/metadata/WrongParameterException.html#WrongParameterException(java.lang.String, java.lang.Throwable)"><B>WrongParameterException(String, Throwable)</B></A> - 
 Constructor for exception compbio.metadata.<A HREF="../compbio/metadata/WrongParameterException.html" title="class in compbio.metadata">WrongParameterException</A>
 <DD>&nbsp;
-<DT><A HREF="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client"><B>WSTester</B></A> - Class in <A HREF="../compbio/ws/client/package-summary.html">compbio.ws.client</A><DD>Class for testing web services<DT><A HREF="../compbio/ws/client/WSTester.html#WSTester()"><B>WSTester()</B></A> - 
-Constructor for class compbio.ws.client.<A HREF="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</A>
+<DT><A HREF="../compbio/data/msa/jaxws/WrongParameterExceptionBean.html" title="class in compbio.data.msa.jaxws"><B>WrongParameterExceptionBean</B></A> - Class in <A HREF="../compbio/data/msa/jaxws/package-summary.html">compbio.data.msa.jaxws</A><DD>This class was generated by the JAX-WS RI.<DT><A HREF="../compbio/data/msa/jaxws/WrongParameterExceptionBean.html#WrongParameterExceptionBean()"><B>WrongParameterExceptionBean()</B></A> - 
+Constructor for class compbio.data.msa.jaxws.<A HREF="../compbio/data/msa/jaxws/WrongParameterExceptionBean.html" title="class in compbio.data.msa.jaxws">WrongParameterExceptionBean</A>
 <DD>&nbsp;
+<DT><A HREF="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client"><B>WSTester</B></A> - Class in <A HREF="../compbio/ws/client/package-summary.html">compbio.ws.client</A><DD>Class for testing web services<DT><A HREF="../compbio/ws/client/WSTester.html#WSTester(java.lang.String, java.io.PrintWriter)"><B>WSTester(String, PrintWriter)</B></A> - 
+Constructor for class compbio.ws.client.<A HREF="../compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</A>
+<DD>Construct an instance of JABAWS tester
 </DL>
 <HR>
 
