X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fclass-use%2F_SkeletalCommandBuilder.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fclass-use%2F_SkeletalCommandBuilder.html;h=e3dd109c793900953eb20b00bf5f848dc5aad343;hb=da8c820a7fb2edecb190589f3dc9c362e57a2f24;hp=0000000000000000000000000000000000000000;hpb=0bbebf27d045b1345bc042bdf24ef2e6808df251;p=jabaws.git diff --git a/website/full_javadoc/compbio/runner/class-use/_SkeletalCommandBuilder.html b/website/full_javadoc/compbio/runner/class-use/_SkeletalCommandBuilder.html new file mode 100644 index 0000000..e3dd109 --- /dev/null +++ b/website/full_javadoc/compbio/runner/class-use/_SkeletalCommandBuilder.html @@ -0,0 +1,313 @@ + + + + + + +Uses of Class compbio.runner._SkeletalCommandBuilder + + + + + + + + + + + + +
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+Uses of Class
compbio.runner._SkeletalCommandBuilder

+
+ + + + + + + + + + + + + +
+Packages that use _SkeletalCommandBuilder
compbio.runnerUtilities commonly used by all runners. 
compbio.runner._impl  
+  +

+ + + + + +
+Uses of _SkeletalCommandBuilder in compbio.runner
+  +

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Methods in compbio.runner that return _SkeletalCommandBuilder
+ _SkeletalCommandBuilder_SkeletalCommandBuilder.addParameter(String parameter) + +
+          Deprecated.  
+ _SkeletalCommandBuilder_SkeletalCommandBuilder.addParameters(List<String> parameters) + +
+          Deprecated.  
+ _SkeletalCommandBuilder_SkeletalCommandBuilder.addParameters(String[] parameters) + +
+          Deprecated.  
+ _SkeletalCommandBuilder_SkeletalCommandBuilder.setEmail(String email) + +
+          Deprecated.  
+ _SkeletalCommandBuilder_SkeletalCommandBuilder.setName(String name) + +
+          Deprecated.  
+  +

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Methods in compbio.runner that return types with arguments of type _SkeletalCommandBuilder
+ Limit<_SkeletalCommandBuilder>_SkeletalCommandBuilder.getLimit(String presetName) + +
+          Deprecated.  
+ LimitsManager<_SkeletalCommandBuilder>_SkeletalCommandBuilder.getLimits() + +
+          Deprecated.  
+ CommandBuilder<_SkeletalCommandBuilder>_SkeletalCommandBuilder.getParameters(Executable.ExecProvider provider) + +
+          Deprecated.  
+  +

+ + + + + +
+Uses of _SkeletalCommandBuilder in compbio.runner._impl
+  +

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Subclasses of _SkeletalCommandBuilder in compbio.runner._impl
+ classBlastAll + +
+           
+ classMcl + +
+           
+ classOB + +
+          TODO this needs fixing! Executable does not work
+ classPSIBlast + +
+           
+ classRonn + +
+           
+ classRPSBlast + +
+           
+  +

+

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