X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=website%2Ffull_javadoc%2Findex-files%2Findex-5.html;h=c9b3e7080a50cf033c67117bc5cb34fc6938e04a;hb=f1bdd8da517901fe1d7957d388ea579ad1fbaa3b;hp=46a4b470dc744ec45d3750fee17c7e1452a05691;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git diff --git a/website/full_javadoc/index-files/index-5.html b/website/full_javadoc/index-files/index-5.html index 46a4b47..c9b3e70 100644 --- a/website/full_javadoc/index-files/index-5.html +++ b/website/full_javadoc/index-files/index-5.html @@ -2,12 +2,12 @@ - + E-Index - + @@ -85,6 +85,9 @@ function windowTitle()
Environment - Class in compbio.runner._impl
This is utility class to encapsulate environmental variables like directory paths
EnvVariableProcessor - Class in compbio.engine.client
 
EnvVariableProcessor() - Constructor for class compbio.engine.client.EnvVariableProcessor
  +
equals(Object) - +Method in class compbio.data.msa.Category +
 
equals(Object) - Method in class compbio.data.sequence.Alignment
Please note that this implementation does not take the order of sequences @@ -95,6 +98,18 @@ Method in class compbio.data.sequence.equals(Object) - Method in class compbio.data.sequence.FastaSequence
  +
equals(Object) - +Method in class compbio.data.sequence.Range +
  +
equals(Object) - +Method in class compbio.data.sequence.Score +
  +
equals(Object) - +Method in class compbio.data.sequence.ScoreManager +
  +
equals(Object) - +Method in class compbio.data.sequence.ScoreManager.ScoreHolder +
 
equals(Object) - Method in class compbio.engine.client.CommandBuilder
  @@ -109,7 +124,7 @@ Method in class compbio.engine. 
equals(Object) - Method in class compbio.engine.conf._Key -
  +
Deprecated.  
equals(Object) - Method in class compbio.engine.FilePuller
  @@ -137,15 +152,27 @@ Method in class compbio.metadata.equals(Object) - Method in class compbio.metadata.ValueConstrain
  +
equals(Object) - +Method in class compbio.pipeline._jpred.Hit +
 
equals(Object) - Method in class compbio.pipeline._jpred.PScore
  +
equals(Object) - +Method in class compbio.stat.collector.JobStat +
  +
equals(Object) - +Method in class compbio.stat.servlet.ServiceTestResult +
  +
equals(Object) - +Method in class compbio.stat.servlet.util.StatCollection +
  +
ERROR - +Static variable in class compbio.engine.client.SkeletalExecutable +
 
Executable<T> - Interface in compbio.engine.client
Interface to a native executable.
Executable.ExecProvider - Enum in compbio.engine.client
 
ExecutableWrapper - Class in compbio.engine.local
 
ExecutableWrapper(ConfiguredExecutable<?>, String) - Constructor for class compbio.engine.local.ExecutableWrapper
  -
execute(Runnable) - -Method in class compbio.engine.local._TrackingExecutor -
 
executeJob() - Method in class compbio.engine.cluster.drmaa.JobRunner
  @@ -155,6 +182,30 @@ Method in class compbio.engine.local.executeJob() - Method in interface compbio.engine.SyncExecutor
Execute the job +
ExecutionStatCollector - Class in compbio.stat.collector
Number of runs of each WS = number of folders with name + + Number of successful runs = all runs with no result file + + Per period of time = limit per file creating time Runtime (avg/max) = + + started time - finished time + + Task & result size = result.size + + Abandoned runs - not collected runs + + Cancelled runs - cancelled + + Cluster vs local runs + + Reasons for failure = look in the err out? + + + Metadata required: + + work directory for local and cluster tasks = from Helper or cmd parameter.
ExecutionStatCollector(String, int) - +Constructor for class compbio.stat.collector.ExecutionStatCollector +
List subdirectories in the job directory