X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=website%2Ffull_javadoc%2Findex-files%2Findex-5.html;h=c9b3e7080a50cf033c67117bc5cb34fc6938e04a;hb=f1bdd8da517901fe1d7957d388ea579ad1fbaa3b;hp=46a4b470dc744ec45d3750fee17c7e1452a05691;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git
diff --git a/website/full_javadoc/index-files/index-5.html b/website/full_javadoc/index-files/index-5.html
index 46a4b47..c9b3e70 100644
--- a/website/full_javadoc/index-files/index-5.html
+++ b/website/full_javadoc/index-files/index-5.html
@@ -2,12 +2,12 @@
-
+
E-Index
-
+
@@ -85,6 +85,9 @@ function windowTitle()
Environment - Class in compbio.runner._impl This is utility class to encapsulate environmental variables like directory paths EnvVariableProcessor - Class in compbio.engine.client EnvVariableProcessor() -
Constructor for class compbio.engine.client.EnvVariableProcessor
+ equals(Object) -
+Method in class compbio.data.msa.Category
+
equals(Object) -
Method in class compbio.data.sequence.Alignment
Please note that this implementation does not take the order of sequences
@@ -95,6 +98,18 @@ Method in class compbio.data.sequence.equals(Object) -
Method in class compbio.data.sequence.FastaSequence
+ equals(Object) -
+Method in class compbio.data.sequence.Range
+
+ equals(Object) -
+Method in class compbio.data.sequence.Score
+
+ equals(Object) -
+Method in class compbio.data.sequence.ScoreManager
+
+ equals(Object) -
+Method in class compbio.data.sequence.ScoreManager.ScoreHolder
+
equals(Object) -
Method in class compbio.engine.client.CommandBuilder
@@ -109,7 +124,7 @@ Method in class compbio.engine.
equals(Object) -
Method in class compbio.engine.conf._Key
-
+Deprecated.
equals(Object) -
Method in class compbio.engine.FilePuller
@@ -137,15 +152,27 @@ Method in class compbio.metadata.equals(Object) -
Method in class compbio.metadata.ValueConstrain
+ equals(Object) -
+Method in class compbio.pipeline._jpred.Hit
+
equals(Object) -
Method in class compbio.pipeline._jpred.PScore
+ equals(Object) -
+Method in class compbio.stat.collector.JobStat
+
+ equals(Object) -
+Method in class compbio.stat.servlet.ServiceTestResult
+
+ equals(Object) -
+Method in class compbio.stat.servlet.util.StatCollection
+
+ ERROR -
+Static variable in class compbio.engine.client.SkeletalExecutable
+
Executable <T > - Interface in compbio.engine.client Interface to a native executable. Executable.ExecProvider - Enum in compbio.engine.client ExecutableWrapper - Class in compbio.engine.local ExecutableWrapper(ConfiguredExecutable<?>, String) -
Constructor for class compbio.engine.local.ExecutableWrapper
- execute(Runnable) -
-Method in class compbio.engine.local._TrackingExecutor
-
executeJob() -
Method in class compbio.engine.cluster.drmaa.JobRunner
@@ -155,6 +182,30 @@ Method in class compbio.engine.local.executeJob() -
Method in interface compbio.engine.SyncExecutor
Execute the job
+ ExecutionStatCollector - Class in compbio.stat.collector Number of runs of each WS = number of folders with name
+
+ Number of successful runs = all runs with no result file
+
+ Per period of time = limit per file creating time Runtime (avg/max) =
+
+ started time - finished time
+
+ Task & result size = result.size
+
+ Abandoned runs - not collected runs
+
+ Cancelled runs - cancelled
+
+ Cluster vs local runs
+
+ Reasons for failure = look in the err out?
+
+
+ Metadata required:
+
+ work directory for local and cluster tasks = from Helper or cmd parameter. ExecutionStatCollector(String, int) -
+Constructor for class compbio.stat.collector.ExecutionStatCollector
+List subdirectories in the job directory