X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=website%2Findex.html;h=c2ae8883c163cd6cd5bd29d917d263370b85f84a;hb=c46caed03164e4396eb55dc30e7db3558a7b06cc;hp=ef18b8f74ce18af9a205db46cb775a1d6a66c5d4;hpb=3c7c0f9194dd9541f4b7b383bd9536565af3b0a6;p=jabaws.git diff --git a/website/index.html b/website/index.html index ef18b8f..c2ae888 100644 --- a/website/index.html +++ b/website/index.html @@ -4,7 +4,7 @@ - + Java Bioinformatics Analyses Web Services (JABAWS) main page @@ -19,7 +19,7 @@ - +
JABAWS-2.0.1JABAWS-2.5.0 Disorder
@@ -35,32 +35,33 @@ Usage Statistics Services Status Contact Us - Barton Group + Barton Group + Funding +
-

JABAWS 2.0.1

+

JABAWS 2.5

JABAWS -is free software which provides web services for multiple sequence alignment -(programs available: Clustal Omega, Clustal W, +is free software which provides web services conveniently packaged to run on your local computer, server, cluster or Amazon EC2 instance. Services for multiple sequence alignment +include Clustal Omega, Clustal W, MAFFT, MUSCLE, -, TCOFFEE and PROBCONS), -prediction of protein disorder (programs available: DisEMBL, IUPred, -Ronn, GlobPlot), -and amino acid conservation (program available: AACon) -conveniently packaged to run on your local computer, server or cluster. +TCOFFEE and PROBCONS. Analysis services allow +prediction of protein disorder with DisEMBL, IUPred, +Ronn and GlobPlot; +and calculation of amino acid alignment conservation with AACon. +

-JABA Web Services can be accessed from the Jalview desktop application and provide multiple alignment -and sequence analysis calculations limited only by your own local computing resources.
-
-Please note that JABAWS 2.0.1 is supported by Jalview 2.8 onwards. You can also access all JABAWS 2.0.1 services through the JABAWS command-line client.

+JABA 2.5 Web Services installations can be accessed from the Jalview desktop application (version 2.8 onwards) and the JABAWS command-line client, and provide multiple alignment +and sequence analysis calculations limited only by your own computing resources.
+

For Users

- The Server: JABAWS Virtual Appliance: (440M) + The Server: JABAWS Virtual Appliance: (440M) or JABAWS on Amazon Webservices Cloud
The Main Client: Jalview (18M)

To use JABA Web Services on most operating systems, just download and install @@ -86,8 +87,8 @@ and sequence analysis calculations limited only by your own local computing reso The Server: JABAWS Web Application aRchive (55M)
The Client: - Command Line Client binary | source + Command Line Client binary | source

You can either use the JABAWS Virtual Appliance or the JABAWS Web Application aRchive (WAR) from your own computer or a lab server. @@ -102,8 +103,8 @@ Check out the quick start guide for furt

Public JABAWS Server

-

You can access our public JABA Web Services with our command line client, - Jalview, or with your own program. Jalview version 2.8 or later is fully compatible with JABAWS 2.0.1. +

You can access our public JABA Web Services with our command line client, + Jalview, or with your own program. Jalview version 2.8 or later is fully compatible with JABAWS 2.5. The latest versions of Jalview are configured to use public JABAWS server by default.

  • The JABAWS public web services address is http://www.compbio.dundee.ac.uk/jabaws
    • @@ -115,13 +116,11 @@ title="http://www.compbio.dundee.ac.uk/jabaws/ClustalWS?" rel= or if you are concerned about privacy or on an unreliable network connection, then you can download and run the JABAWS Server on your own hardware.

    Previous versions of JABAWS

    -

    Old JABAWS versions are available here: - http://www.compbio.dundee.ac.uk/jabaws1 and - http://www.compbio.dundee.ac.uk/jabaws2. - We advise you to update to the JABAWS 2.0.1 as this version is fully backward compatible with JABAWS v1.0 and v2.0 and - contain numerous improvements. Please consult the manual for more information - on compatibility between versions. -

    +

    We advise you to update to JABAWS 2.5 as this version is fully backward compatible with JABAWS v1.0 and v2.0 and + contains some important bug fixes. Please consult the manual for more information + on compatibility between versions.

    Should you require them, however, old versions of JABAWS are available here:

    Reference

    Peter V. Troshin, James B. Procter and Geoffrey J. Barton - "Java Bioinformatics Analysis Web Services for