-![University of Dundee University of Dundee](images/uod_lt_long.gif) |
-![Java Bioinformatics Analysis Web Services version 2.1 JABAWS-2.1](images/jabaws21.png) |
-![Disorder](images/banner_right.png) |
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JABAWS MANUAL
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Installing the JABAWS WAR file
Preparing executables for use with JABAWS
Using the pre-compiled i386 binaries on Linux
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Recompiling the bundled
- programs for your system
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Reuse the binaries that are
- already in your system
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Recompiling the bundled programs for your system
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Reuse the binaries that are already in your system
Obtaining command line binaries for your operating system
Testing JABAWS Server
Running many JABAWS instances on the same server
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JABAWS supported cluster batch management systems
Manually deploying JABAWS application on Apache-Tomcat
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Troubleshooting
- Apache-Tomcat fails to deploy the jabaws.war file
@@ -182,7 +184,7 @@ modify the paths in executable.properties as described above. Below are some suggestions on where you may be able to get the binaries for your system.
- Clustal Omega
- - ClustalW
+ - ClustalW
- Mafft
- Muscle
- Tcoffee
@@ -234,17 +236,11 @@ modify the paths in Restart the Tomcat, sometimes it will not since that the new war file is added without restart
- If Tomcat still refuses to unpack the war file, unpack it manually into web application folder (the war file is just a zip archive). Restart the Tomcat.
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-Last update: 16 September 2011
- Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of
-Dundee, UK
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+Last update: 28 June 2013
Sasha Sherstnev, Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK
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