X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=website%2Ftests%2FAnt%20suite%2FAnt%20test.html;h=4ad541983814ac581918d23a6d8c208c83428f74;hb=f1bdd8da517901fe1d7957d388ea579ad1fbaa3b;hp=98af8e88dd42b4f6fd4dd4df418c263c8af5d8c0;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git diff --git a/website/tests/Ant suite/Ant test.html b/website/tests/Ant suite/Ant test.html index 98af8e8..4ad5419 100644 --- a/website/tests/Ant suite/Ant test.html +++ b/website/tests/Ant suite/Ant test.html @@ -55,15 +55,15 @@ function toggleAllBoxes() {
Tests passed/Failed/Skipped: | 165/0/0 | +Tests passed/Failed/Skipped: | 216/0/0 |
Started on: | Wed Feb 17 15:34:08 GMT 2010 | +Started on: | Thu Jun 23 10:34:54 BST 2011 |
Total time: | 524 seconds (524407 ms) | +||
Total time: | 453 seconds (453928 ms) | ||
Included groups: | |||
Excluded groups: | performance | +Excluded groups: | webservices performance |
compbio.metadata.ResultNotAvailableException: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/clustengine/jobsout/local/ClustalW#6731244848891847 with file name TO1381.clustal.cluster.out is not found! - at compbio.runner.msa.ClustalW.getResults(ClustalW.java:79) - at compbio.runner.msa.ClustalW.getResults(ClustalW.java:37) - at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:206) +compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester@57c8b24d 1 + Click to show all stack frames -compbio.metadata.ResultNotAvailableException: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found! + at compbio.runner.msa.ClustalW.getResults(ClustalW.java:73) + at compbio.runner.msa.ClustalW.getResults(ClustalW.java:34) + at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:207) at compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel(DrmaaAsyncClusterEngineTester.java:109) -Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/clustengine/jobsout/local/ClustalW#6731244848891847 with file name TO1381.clustal.cluster.out is not found! - at compbio.runner.Util.readClustalFile(Util.java:126) - at compbio.runner.msa.ClustalW.getResults(ClustalW.java:76) +Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found! + at compbio.runner.Util.readClustalFile(Util.java:93) + at compbio.runner.msa.ClustalW.getResults(ClustalW.java:70) ... 25 more -... Removed 22 stack framesClick to show all stack frames +compbio.metadata.ResultNotAvailableException: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/clustengine/jobsout/local/ClustalW#6731244848891847 with file name TO1381.clustal.cluster.out is not found! - at compbio.runner.msa.ClustalW.getResults(ClustalW.java:79) - at compbio.runner.msa.ClustalW.getResults(ClustalW.java:37) - at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:206) +... Removed 22 stack framescompbio.metadata.ResultNotAvailableException: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found! + at compbio.runner.msa.ClustalW.getResults(ClustalW.java:73) + at compbio.runner.msa.ClustalW.getResults(ClustalW.java:34) + at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:207) at compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel(DrmaaAsyncClusterEngineTester.java:109) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) @@ -194,33 +224,33 @@ Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/ at org.testng.TestNG.run(TestNG.java:784) at org.testng.TestNG.privateMain(TestNG.java:949) at org.testng.TestNG.main(TestNG.java:922) -Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/clustengine/jobsout/local/ClustalW#6731244848891847 with file name TO1381.clustal.cluster.out is not found! - at compbio.runner.Util.readClustalFile(Util.java:126) - at compbio.runner.msa.ClustalW.getResults(ClustalW.java:76) +Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found! + at compbio.runner.Util.readClustalFile(Util.java:93) + at compbio.runner.msa.ClustalW.getResults(ClustalW.java:70) ... 25 more
java.util.concurrent.CancellationException at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108) at compbio.engine.local.LocalRunner.waitForResult(LocalRunner.java:99) at compbio.engine.local.LocalRunnerTester.testCancelCompletedTaskLocally(LocalRunnerTester.java:139) -... Removed 22 stack frames
java.util.concurrent.CancellationException +... Removed 22 stack frames
java.util.concurrent.CancellationException at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108) @@ -252,15 +282,15 @@ Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/
java.util.concurrent.CancellationException at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108) at compbio.engine.local.AsyncLocalRunner.getResults(AsyncLocalRunner.java:130) at compbio.engine.local.AsyncLocalRunnerTester.testCancelLocally(AsyncLocalRunnerTester.java:105) -... Removed 22 stack frames
java.util.concurrent.CancellationException +... Removed 22 stack frames
java.util.concurrent.CancellationException at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108) @@ -292,15 +322,15 @@ Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/
java.util.concurrent.CancellationException at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108) at compbio.engine.local.LocalRunner.waitForResult(LocalRunner.java:99) at compbio.engine.local.LocalRunnerTester.testCancelLocally(LocalRunnerTester.java:66) -... Removed 22 stack frames
java.util.concurrent.CancellationException +... Removed 22 stack frames
java.util.concurrent.CancellationException at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108) @@ -331,163 +361,198 @@ Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/
java.lang.IllegalStateException: Attempting to set default value for parameter: Option name: Matrix Description: DNA weight matrix URL: null @@ -496,8 +561,8 @@ Is required: false Without possible values! Please define possible value first! at compbio.metadata.Parameter.setDefaultValue(Parameter.java:234) at compbio.metadata.RunnerConfigTester.testCreateNumParameterWithoutValidValue(RunnerConfigTester.java:222) -... Removed 22 stack frames
java.lang.IllegalStateException: Attempting to set default value for parameter: Option name: Matrix +... Removed 22 stack frames
java.lang.IllegalStateException: Attempting to set default value for parameter: Option name: Matrix Description: DNA weight matrix URL: null Is required: false @@ -531,7 +596,7 @@ Is required: false
compbio.metadata.WrongParameterException: Attempting to set illegal value 'pam22' for the parameter: Option name: Matrix1 Description: Protein weight matrix URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html @@ -547,8 +612,8 @@ PAM at compbio.metadata.Parameter.setDefaultValue(Parameter.java:240) at compbio.metadata.RunnerConfigTester.testCreateParameter(RunnerConfigTester.java:93) -... Removed 22 stack frames
compbio.metadata.WrongParameterException: Attempting to set illegal value 'pam22' for the parameter: Option name: Matrix1 +... Removed 22 stack frames
compbio.metadata.WrongParameterException: Attempting to set illegal value 'pam22' for the parameter: Option name: Matrix1 Description: Protein weight matrix URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html Is required: true @@ -589,197 +654,217 @@ PAM
javax.xml.bind.MarshalException - with linked exception: [org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.] - at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:328) - at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249) at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75) at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88) at compbio.metadata.OptionMarshallerTester.testMarshalling(OptionMarshallerTester.java:140) @@ -794,25 +879,25 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685) at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549) at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527) - at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:124) - at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:102) - at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:305) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:697) - at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65) - at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168) - at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152) - at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:332) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:592) - at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:320) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:493) - at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325) + at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128) + at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106) + at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699) + at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69) + at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172) + at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159) + at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597) + at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320) ... 26 more -... Removed 22 stack frames
javax.xml.bind.MarshalException +... Removed 22 stack frames
javax.xml.bind.MarshalException - with linked exception: [org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.] - at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:328) - at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249) at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75) at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88) at compbio.metadata.OptionMarshallerTester.testMarshalling(OptionMarshallerTester.java:140) @@ -849,32 +934,32 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685) at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549) at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527) - at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:124) - at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:102) - at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:305) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:697) - at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65) - at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168) - at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152) - at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:332) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:592) - at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:320) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:493) - at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325) + at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128) + at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106) + at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699) + at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69) + at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172) + at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159) + at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597) + at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320) ... 26 more
java.util.concurrent.CancellationException at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108) at compbio.engine.local.AsyncLocalRunner.getResults(AsyncLocalRunner.java:130) at compbio.engine.local.AsyncLocalRunnerTester.testMultipleCancelLocally(AsyncLocalRunnerTester.java:239) -... Removed 22 stack frames
java.util.concurrent.CancellationException +... Removed 22 stack frames
java.util.concurrent.CancellationException at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108) @@ -906,15 +991,15 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten
java.util.concurrent.CancellationException at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108) at compbio.engine.local.LocalRunner.waitForResult(LocalRunner.java:99) at compbio.engine.local.LocalRunnerTester.testMultipleCancelLocally(LocalRunnerTester.java:114) -... Removed 22 stack frames
java.util.concurrent.CancellationException +... Removed 22 stack frames
java.util.concurrent.CancellationException at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108) @@ -946,12 +1031,12 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten
javax.xml.bind.ValidationException: Default value is required as multiple optionNames are defined for option: Option name: Matrix1 Description: Protein weight matrix URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html @@ -963,8 +1048,8 @@ Option Names: at compbio.metadata.Option.validate(Option.java:317) at compbio.metadata.RunnerConfigTester.testOptionNoDefaultValidate(RunnerConfigTester.java:149) -... Removed 22 stack frames
javax.xml.bind.ValidationException: Default value is required as multiple optionNames are defined for option: Option name: Matrix1 +... Removed 22 stack frames
javax.xml.bind.ValidationException: Default value is required as multiple optionNames are defined for option: Option name: Matrix1 Description: Protein weight matrix URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html Is required: true @@ -1001,7 +1086,7 @@ Option Names:
compbio.metadata.WrongParameterException: Attempting to set illegal defaultValue 'AAA' which is not defined optionNames for option: Option name: Matrix1 Description: Protein weight matrix URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html @@ -1013,8 +1098,8 @@ Option Names: at compbio.metadata.Option.setDefaultValue(Option.java:130) at compbio.metadata.RunnerConfigTester.testOptionSetInvalidValue(RunnerConfigTester.java:172) -... Removed 22 stack frames
compbio.metadata.WrongParameterException: Attempting to set illegal defaultValue 'AAA' which is not defined optionNames for option: Option name: Matrix1 +... Removed 22 stack frames
compbio.metadata.WrongParameterException: Attempting to set illegal defaultValue 'AAA' which is not defined optionNames for option: Option name: Matrix1 Description: Protein weight matrix URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html Is required: true @@ -1051,272 +1136,437 @@ Option Names:
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float Min: -10.12 Max: 0 @@ -1334,8 +1584,8 @@ Max: 0 at compbio.metadata.Parameter.setDefaultValue(Parameter.java:248) at compbio.metadata.RunnerConfigTester.testValidateLowerBoundaryConstrainCheck(RunnerConfigTester.java:268) -... Removed 22 stack frames
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float +... Removed 22 stack frames
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float Min: -10.12 Max: 0 @@ -1378,7 +1628,7 @@ Max: 0
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float Min: -10.12 Max: 0 @@ -1396,8 +1646,8 @@ Max: 0 at compbio.metadata.Parameter.setDefaultValue(Parameter.java:248) at compbio.metadata.RunnerConfigTester.testValidateUpperBoundaryConstrainCheck(RunnerConfigTester.java:296) -... Removed 22 stack frames
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float +... Removed 22 stack frames
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float Min: -10.12 Max: 0 @@ -1440,13 +1690,13 @@ Max: 0
javax.xml.bind.ValidationException: Both boundaries (min and max) is undefined for ValueConstrain: Type: Float at compbio.metadata.ValueConstrain.validate(ValueConstrain.java:208) at compbio.metadata.RunnerConfigTester.testValidateValueConstrain(RunnerConfigTester.java:341) -... Removed 22 stack frames
javax.xml.bind.ValidationException: Both boundaries (min and max) is undefined for ValueConstrain: Type: Float +... Removed 22 stack frames
javax.xml.bind.ValidationException: Both boundaries (min and max) is undefined for ValueConstrain: Type: Float at compbio.metadata.ValueConstrain.validate(ValueConstrain.java:208) at compbio.metadata.RunnerConfigTester.testValidateValueConstrain(RunnerConfigTester.java:341) @@ -1476,20 +1726,20 @@ Max: 0
javax.xml.bind.MarshalException - with linked exception: [org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.] - at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:328) - at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249) at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75) at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88) - at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:258) + at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:259) Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected. at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:195) at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.error(ErrorHandlerWrapper.java:131) @@ -1501,28 +1751,28 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685) at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549) at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527) - at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:124) - at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:102) - at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:305) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:697) - at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65) - at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168) - at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152) - at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:332) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:592) - at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:320) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:493) - at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325) + at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128) + at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106) + at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699) + at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69) + at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172) + at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159) + at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597) + at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320) ... 26 more -... Removed 22 stack frames
javax.xml.bind.MarshalException +... Removed 22 stack frames
javax.xml.bind.MarshalException - with linked exception: [org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.] - at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:328) - at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249) at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75) at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88) - at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:258) + at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:259) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) @@ -1556,64 +1806,69 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685) at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549) at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527) - at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:124) - at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:102) - at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:305) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:697) - at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65) - at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168) - at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152) - at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:332) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:592) - at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:320) - at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:493) - at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325) + at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128) + at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106) + at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699) + at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69) + at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172) + at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159) + at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597) + at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328) + at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498) + at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320) ... 26 more