X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.classpath;h=038fd0d56e6d2da1762b0dab2075870b73e2d2f8;hb=95ab78c1f04b242f4b0a80781caec2d484805934;hp=ac6ed9614a076e18a4eb426dda3b4cfcf5817cf4;hpb=1bd2350fdb5cce781548ce2e2188ab14bd412b6d;p=jalview.git

diff --git a/.classpath b/.classpath
index ac6ed96..038fd0d 100644
--- a/.classpath
+++ b/.classpath
@@ -1,97 +1,76 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="src" output="bin/main" path="src">
+	<classpathentry kind="output" path="bin/default"/>
+	<classpathentry output="bin/main" kind="src" path="src">
 		<attributes>
 			<attribute name="gradle_scope" value="main"/>
 			<attribute name="gradle_used_by_scope" value=""/>
 		</attributes>
 	</classpathentry>
-	<classpathentry kind="src" output="bin/main" path="resources">
+	<classpathentry output="bin/test" kind="src" path="test">
 		<attributes>
-			<attribute name="gradle_scope" value="main"/>
-			<attribute name="gradle_used_by_scope" value=""/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="bin/test" path="test">
-		<attributes>
-			<attribute name="test" value="true"/>
 			<attribute name="gradle_scope" value="test"/>
 			<attribute name="gradle_used_by_scope" value=""/>
+			<attribute name="test" value="true"/>
 		</attributes>
 	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-11/">
-		<attributes>
-			<attribute name="module" value="true"/>
-		</attributes>
-	</classpathentry>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8/"/>
 	<classpathentry kind="con" path="org.eclipse.buildship.core.gradleclasspathcontainer"/>
-	<classpathentry kind="lib" path="j11lib/jsoup-1.8.1.jar"/>
-	<classpathentry kind="lib" path="j11lib/jswingreader-0.3.jar"/>
-	<classpathentry kind="lib" path="j11lib/mail-MODULE.jar"/>
-	<classpathentry kind="lib" path="j11lib/javax.servlet-api-MODULE.jar"/>
-	<classpathentry kind="lib" path="j11lib/httpclient-4.0.3.jar"/>
-	<classpathentry kind="lib" path="j11lib/regex.jar"/>
-	<classpathentry kind="lib" path="j11lib/policy.jar"/>
-	<classpathentry kind="lib" path="j11lib/jaxb-api-java9.jar"/>
-	<classpathentry kind="lib" path="j11lib/JGoogleAnalytics_0.3.jar"/>
-	<classpathentry kind="lib" path="j11lib/jetty-http-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j11lib/javax.activation-MODULE.jar"/>
-	<classpathentry kind="lib" path="j11lib/getdown-launcher.jar"/>
-	<classpathentry kind="lib" path="j11lib/commons-logging-1.1.1.jar"/>
-	<classpathentry kind="lib" path="j11lib/slf4j-log4j12-1.7.7.jar"/>
-	<classpathentry kind="lib" path="j11lib/miglayout-4.0-swing.jar"/>
-	<classpathentry kind="lib" path="j11lib/txw2.jar"/>
-	<classpathentry kind="lib" path="j11lib/quaqua-filechooser-only-8.0.jar"/>
-	<classpathentry kind="lib" path="j11lib/VARNAv3-93.jar"/>
-	<classpathentry kind="lib" path="j11lib/groovy-2.5.6.jar"/>
-	<classpathentry kind="lib" path="j11lib/jersey-client-1.19.jar"/>
-	<classpathentry kind="lib" path="j11lib/jaxb-runtime.jar"/>
-	<classpathentry kind="lib" path="j11lib/commons-discovery.jar"/>
-	<classpathentry kind="lib" path="j11lib/slf4j-api-1.7.7.jar"/>
-	<classpathentry kind="lib" path="j11lib/VAqua5-patch.jar"/>
-	<classpathentry kind="lib" path="j11lib/jaxws-api.jar"/>
-	<classpathentry kind="lib" path="j11lib/javax.xml.soap-api.jar"/>
-	<classpathentry kind="lib" path="j11lib/libquaqua-8.0.jnilib.jar"/>
-	<classpathentry kind="lib" path="j11lib/istack-commons-runtime.jar"/>
-	<classpathentry kind="lib" path="j11lib/jersey-json-1.19.jar"/>
-	<classpathentry kind="lib" path="j11lib/stax-ex.jar"/>
-	<classpathentry kind="lib" path="j11lib/httpmime-4.0.3.jar"/>
-	<classpathentry kind="lib" path="j11lib/biojava-core-4.1.0.jar"/>
-	<classpathentry kind="lib" path="j11lib/libquaqua64-8.0.jnilib.jar"/>
-	<classpathentry kind="lib" path="j11lib/jabaws-min-client-2.2.0.jar"/>
-	<classpathentry kind="lib" path="j11lib/jetty-io-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j11lib/intervalstore-v1.0.jar"/>
-	<classpathentry kind="lib" path="j11lib/htsjdk-2.12.0.jar"/>
-	<classpathentry kind="lib" path="j11lib/groovy-console-2.5.6.jar"/>
-	<classpathentry kind="lib" path="j11lib/javax.ws.rs-api-2.1.1.jar"/>
-	<classpathentry kind="lib" path="j11lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="j11lib/jaxws-rt-java9.jar"/>
-	<classpathentry kind="lib" path="j11lib/vamsas-client.jar"/>
-	<classpathentry kind="lib" path="j11lib/saaj-impl.jar"/>
-	<classpathentry kind="lib" path="j11lib/jetty-server-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j11lib/jetty-util-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="j11lib/xercesImpl.jar"/>
-	<classpathentry kind="lib" path="j11lib/Jmol-14.6.4_2016.10.26-no_netscape.jar"/>
-	<classpathentry kind="lib" path="j11lib/FastInfoset.jar"/>
-	<classpathentry kind="lib" path="j11lib/commons-compress-1.18.jar"/>
-	<classpathentry kind="lib" path="j11lib/biojava-ontology-4.1.0.jar"/>
-	<classpathentry kind="lib" path="j11lib/log4j-to-slf4j-2.0-rc2.jar"/>
-	<classpathentry kind="lib" path="j11lib/jersey-core-1.19.jar"/>
-	<classpathentry kind="lib" path="j11lib/wsdl4j-MODULE.jar"/>
-	<classpathentry kind="lib" path="j11lib/httpcore-4.0.1.jar"/>
-	<classpathentry kind="lib" path="j11lib/jhall.jar"/>
-	<classpathentry kind="lib" path="j11lib/stax2-api-MODULE.jar"/>
-	<classpathentry kind="lib" path="j11lib/gmbal-api-only-MODULE.jar"/>
-	<classpathentry kind="lib" path="j11lib/javax.jws-api-1.1.jar"/>
-	<classpathentry kind="lib" path="j11lib/axis.jar"/>
-	<classpathentry kind="lib" path="j11lib/javax.xml.rpc-api-1.1.2.jar"/>
-	<classpathentry kind="lib" path="j11lib/javax.annotation-api-MODULE.jar"/>
-	<classpathentry kind="lib" path="j11lib/java-json.jar"/>
-	<classpathentry kind="lib" path="j11lib/mimepull.jar"/>
-	<classpathentry kind="lib" path="j11lib/jfreesvg-2.1.jar"/>
-	<classpathentry kind="lib" path="j11lib/streambuffer.jar"/>
-	<classpathentry kind="lib" path="j11lib/apache-mime4j-0.6.jar"/>
-	<classpathentry kind="lib" path="j11lib/json_simple-1.1.jar"/>
+	<classpathentry kind="output" path="bin/main"/>
+	<classpathentry kind="lib" path="help"/>
+	<classpathentry kind="lib" path="resources"/>
+	<classpathentry kind="lib" path="j8lib/jsoup-1.8.1.jar"/>
+	<classpathentry kind="lib" path="j8lib/jswingreader-0.3.jar"/>
+	<classpathentry kind="lib" path="j8lib/mail.jar"/>
+	<classpathentry kind="lib" path="j8lib/httpclient-4.0.3.jar"/>
+	<classpathentry kind="lib" path="j8lib/regex.jar"/>
+	<classpathentry kind="lib" path="j8lib/getdown-core.jar"/>
+	<classpathentry kind="lib" path="j8lib/JGoogleAnalytics_0.3.jar"/>
+	<classpathentry kind="lib" path="j8lib/jetty-http-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j8lib/commons-logging-1.1.1.jar"/>
+	<classpathentry kind="lib" path="j8lib/slf4j-log4j12-1.7.7.jar"/>
+	<classpathentry kind="lib" path="j8lib/servlet-api-3.1.jar"/>
+	<classpathentry kind="lib" path="j8lib/i4jruntime.jar"/>
+	<classpathentry kind="lib" path="j8lib/miglayout-4.0-swing.jar"/>
+	<classpathentry kind="lib" path="j8lib/activation.jar"/>
+	<classpathentry kind="lib" path="j8lib/quaqua-filechooser-only-8.0.jar"/>
+	<classpathentry kind="lib" path="j8lib/VARNAv3-93.jar"/>
+	<classpathentry kind="lib" path="j8lib/jersey-client-1.19.jar"/>
+	<classpathentry kind="lib" path="j8lib/wsdl4j.jar"/>
+	<classpathentry kind="lib" path="j8lib/commons-discovery.jar"/>
+	<classpathentry kind="lib" path="j8lib/slf4j-api-1.7.7.jar"/>
+	<classpathentry kind="lib" path="j8lib/VAqua5-patch.jar"/>
+	<classpathentry kind="lib" path="j8lib/jsr311-api-1.1.1.jar"/>
+	<classpathentry kind="lib" path="j8lib/libquaqua-8.0.jnilib.jar"/>
+	<classpathentry kind="lib" path="j8lib/Jmol-14.29.17.jar"/>
+	<classpathentry kind="lib" path="j8lib/jersey-json-1.19.jar"/>
+	<classpathentry kind="lib" path="j8lib/httpmime-4.0.3.jar"/>
+	<classpathentry kind="lib" path="j8lib/groovy-all-2.4.12-indy.jar"/>
+	<classpathentry kind="lib" path="j8lib/biojava-core-4.1.0.jar"/>
+	<classpathentry kind="lib" path="j8lib/libquaqua64-8.0.jnilib.jar"/>
+	<classpathentry kind="lib" path="j8lib/jabaws-min-client-2.2.0.jar"/>
+	<classpathentry kind="lib" path="j8lib/jetty-io-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j8lib/intervalstore-v1.0.jar"/>
+	<classpathentry kind="lib" path="j8lib/htsjdk-2.12.0.jar"/>
+	<classpathentry kind="lib" path="j8lib/commons-codec-1.3.jar"/>
+	<classpathentry kind="lib" path="j8lib/vamsas-client.jar"/>
+	<classpathentry kind="lib" path="j8lib/xml-apis.jar"/>
+	<classpathentry kind="lib" path="j8lib/jetty-server-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j8lib/jetty-util-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j8lib/xercesImpl.jar"/>
+	<classpathentry kind="lib" path="j8lib/commons-compress-1.18.jar"/>
+	<classpathentry kind="lib" path="j8lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="lib" path="j8lib/log4j-to-slf4j-2.0-rc2.jar"/>
+	<classpathentry kind="lib" path="j8lib/jersey-core-1.19.jar"/>
+	<classpathentry kind="lib" path="j8lib/httpcore-4.0.1.jar"/>
+	<classpathentry kind="lib" path="j8lib/jhall.jar"/>
+	<classpathentry kind="lib" path="j8lib/axis.jar"/>
+	<classpathentry kind="lib" path="j8lib/jaxrpc.jar"/>
+	<classpathentry kind="lib" path="j8lib/java-json.jar"/>
+	<classpathentry kind="lib" path="j8lib/jfreesvg-2.1.jar"/>
+	<classpathentry kind="lib" path="j8lib/apache-mime4j-0.6.jar"/>
+	<classpathentry kind="lib" path="j8lib/saaj.jar"/>
+	<classpathentry kind="lib" path="j8lib/json_simple-1.1.jar"/>
 	<classpathentry kind="lib" path="utils/proguard_5.3.3.jar">
 		<attributes>
 			<attribute name="test" value="true"/>
@@ -182,5 +161,4 @@
 			<attribute name="test" value="true"/>
 		</attributes>
 	</classpathentry>
-	<classpathentry kind="output" path="bin/main"/>
 </classpath>