X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.classpath;h=1cca7bab7ac0cbb76e5e53dab2a3011f92fa6142;hb=refs%2Fheads%2Fbug%2FJAL-3162featureStartLtEnd;hp=fae5ca0ec7c5839f4d8c562fecc8dbe1d539c3df;hpb=ae216fceddd8539d20fa5425cdaef3da73aba8f0;p=jalview.git

diff --git a/.classpath b/.classpath
index fae5ca0..1cca7ba 100644
--- a/.classpath
+++ b/.classpath
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
 	<classpathentry kind="src" path="src"/>
+	<!-- classpathentry kind="src" path="test"/  -->
+	<classpathentry kind="src" path="src2"/>
 	<classpathentry kind="src" path="utils"/>
-	<classpathentry kind="src" path="test"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
 	<classpathentry kind="lib" path="lib/activation.jar"/>
 	<classpathentry kind="lib" path="lib/axis.jar" sourcepath="D:/axis-1_2RC2-src/axis-1_2RC2"/>
 	<classpathentry kind="lib" path="lib/commons-discovery.jar"/>
@@ -14,7 +14,6 @@
 	<classpathentry kind="lib" path="lib/saaj.jar"/>
 	<classpathentry kind="lib" path="lib/wsdl4j.jar"/>
 	<classpathentry kind="lib" path="lib/xercesImpl.jar"/>
-	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
 	<classpathentry kind="lib" path="lib/castor-1.1-cycle-xml.jar" sourcepath="C:/Documents and Settings/JimP/workspace-3.3/castor/src/main/java"/>
 	<classpathentry kind="lib" path="lib/JGoogleAnalytics_0.3.jar" sourcepath="/JGoogleAnalytics/src/main/java"/>
 	<classpathentry kind="lib" path="lib/vamsas-client.jar"/>
@@ -38,20 +37,40 @@
 	<classpathentry kind="lib" path="lib/miglayout-4.0-swing.jar"/>
 	<classpathentry kind="lib" path="lib/jswingreader-0.3.jar" sourcepath="/jswingreader"/>
 	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="lib/Jmol-12.2.4.jar" sourcepath="/Users/jimp/Documents/e6-workspace-new/Jmol/src"/>
-	<classpathentry kind="lib" path="appletlib/JmolApplet-12.2.4.jar"/>
-	<classpathentry kind="lib" path="lib/jdas-1.0.4.jar"/>
 	<classpathentry kind="lib" path="lib/spring-core-3.0.5.RELEASE.jar"/>
 	<classpathentry kind="lib" path="lib/spring-web-3.0.5.RELEASE.jar"/>
-	<classpathentry kind="lib" path="lib/groovy-all-1.8.2.jar"/>
-	<classpathentry kind="lib" path="lib/min-jabaws-client-2.1.0.jar" sourcepath="/clustengine"/>
-	<classpathentry kind="lib" path="lib/VARNAv3-9.jar" sourcepath="/Users/jimp/Documents/Jalview/VARNA/VARNAv3-9-src.jar"/>
+	<classpathentry kind="lib" path="lib/jabaws-min-client-2.2.0.jar" sourcepath="/clustengine"/>
 	<classpathentry kind="lib" path="lib/json_simple-1.1.jar" sourcepath="/Users/jimp/Downloads/json_simple-1.1-all.zip"/>
-	<classpathentry kind="lib" path="lib/min-jabaws-client-nolog-2.1.0.jar"/>
 	<classpathentry kind="lib" path="lib/slf4j-api-1.7.7.jar"/>
+	<classpathentry kind="lib" path="lib/jsoup-1.8.1.jar"/>
 	<classpathentry kind="lib" path="lib/log4j-to-slf4j-2.0-rc2.jar"/>
 	<classpathentry kind="lib" path="lib/slf4j-log4j12-1.7.7.jar"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.jar"/>
+	<classpathentry kind="lib" path="lib/VARNAv3-93.jar"/>
+	<classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
+	<classpathentry kind="lib" path="lib/quaqua-filechooser-only-8.0.jar"/>
+	<classpathentry kind="lib" path="lib/VAqua5-patch.jar"/>
+	<classpathentry kind="lib" path="utils/classgraph-4.1.6.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
+	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/Plugin.jar"/>
+	<classpathentry kind="lib" path="lib/jersey-client-1.19.jar"/>
+	<classpathentry kind="lib" path="lib/jersey-core-1.19.jar"/>
+	<classpathentry kind="lib" path="lib/jsr311-api-1.1.1.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-server-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/servlet-api-3.1.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-util-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-http-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-io-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/java-json.jar"/>
+	<classpathentry kind="con" path="org.testng.TESTNG_CONTAINER"/>
+	<classpathentry kind="lib" path="lib/biojava-core-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/htsjdk-2.12.0.jar"/>
+	<classpathentry kind="lib" path="lib/groovy-all-2.4.12-indy.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
+	<classpathentry exported="true" kind="con" path="GROOVY_DSL_SUPPORT"/>
+	<classpathentry kind="lib" path="lib/Jmol-14.29.17.jar"/>
 	<classpathentry kind="output" path="classes"/>
 </classpath>