X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.classpath;h=4a3dbd620ffb2e94363232aa773a8ccb8164ceba;hb=5ce14b5b6a9cbc2ee556780b5b7b415ead9d0408;hp=a1fb44d2c2695c2b46fb0fb15863e67f14796884;hpb=5b2ca3639597b44f4bd3d225c3c8522b485993a0;p=jalview.git

diff --git a/.classpath b/.classpath
index a1fb44d..4a3dbd6 100644
--- a/.classpath
+++ b/.classpath
@@ -36,26 +36,38 @@
 	<classpathentry kind="lib" path="lib/miglayout-4.0-swing.jar"/>
 	<classpathentry kind="lib" path="lib/jswingreader-0.3.jar" sourcepath="/jswingreader"/>
 	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="lib/Jmol-12.2.4.jar" sourcepath="/Users/jimp/Documents/e6-workspace-new/Jmol/src"/>
-	<classpathentry kind="lib" path="appletlib/JmolApplet-12.2.4.jar"/>
 	<classpathentry kind="lib" path="lib/jdas-1.0.4.jar"/>
 	<classpathentry kind="lib" path="lib/spring-core-3.0.5.RELEASE.jar"/>
 	<classpathentry kind="lib" path="lib/spring-web-3.0.5.RELEASE.jar"/>
-	<classpathentry kind="lib" path="lib/groovy-all-1.8.2.jar"/>
+	<classpathentry kind="lib" path="lib/groovy-all-2.4.6-indy.jar"/>
 	<classpathentry kind="lib" path="lib/min-jabaws-client-2.1.0.jar" sourcepath="/clustengine"/>
 	<classpathentry kind="lib" path="lib/json_simple-1.1.jar" sourcepath="/Users/jimp/Downloads/json_simple-1.1-all.zip"/>
 	<classpathentry kind="lib" path="lib/slf4j-api-1.7.7.jar"/>
 	<classpathentry kind="lib" path="lib/jsoup-1.8.1.jar"/>
 	<classpathentry kind="lib" path="lib/log4j-to-slf4j-2.0-rc2.jar"/>
 	<classpathentry kind="lib" path="lib/slf4j-log4j12-1.7.7.jar"/>
-	<classpathentry kind="lib" path="lib/VARNAv3-91.jar"/>
+	<classpathentry kind="lib" path="lib/VARNAv3-93.jar"/>
+	<classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
+	<classpathentry kind="lib" path="lib/quaqua-filechooser-only-8.0.jar"/>
+	<classpathentry kind="lib" path="lib/htsjdk-1.133.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
 	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
-	<classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
-	<classpathentry kind="lib" path="lib/quaqua-filechooser-only.jar"/>
-	
-	
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/Plugin.jar"/>
+	<classpathentry kind="lib" path="lib/jersey-client-1.19.jar"/>
+	<classpathentry kind="lib" path="lib/jersey-core-1.19.jar"/>
+	<classpathentry kind="lib" path="lib/jsr311-api-1.1.1.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-server-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/servlet-api-3.1.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-util-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-http-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-io-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/java-json.jar"/>
+	<classpathentry kind="lib" path="lib/Jmol-14.2.14_2015.06.11.jar"/>
+	<classpathentry kind="con" path="org.testng.TESTNG_CONTAINER"/>
+	<classpathentry kind="lib" path="lib/biojava-core-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/biojava-ontology-4.1.0.jar"/>
 	<classpathentry kind="output" path="classes"/>
 </classpath>