X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.classpath;h=7186f568062d18c66090b8d107bc9916c4a66550;hb=271c75085302a19ef792d24c1a6f4f8166492b8e;hp=473d937141e05b438cf17dba849aa5d8a0407a70;hpb=c9df5bd6e95c23c9b560c0a59003d1f4043f8055;p=jalview.git

diff --git a/.classpath b/.classpath
index 473d937..7186f56 100644
--- a/.classpath
+++ b/.classpath
@@ -1,70 +1,90 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-	<classpathentry kind="src" path="src"/>
-	<classpathentry kind="src" path="utils"/>
-	<classpathentry kind="src" path="test"/>
-	<classpathentry kind="lib" path="lib/activation.jar"/>
-	<classpathentry kind="lib" path="lib/axis.jar" sourcepath="D:/axis-1_2RC2-src/axis-1_2RC2"/>
-	<classpathentry kind="lib" path="lib/commons-discovery.jar"/>
-	<classpathentry kind="lib" path="lib/jaxrpc.jar"/>
-	<classpathentry kind="lib" path="lib/jhall.jar"/>
-	<classpathentry kind="lib" path="lib/mail.jar"/>
-	<classpathentry kind="lib" path="lib/regex.jar"/>
-	<classpathentry kind="lib" path="lib/saaj.jar"/>
-	<classpathentry kind="lib" path="lib/wsdl4j.jar"/>
-	<classpathentry kind="lib" path="lib/xercesImpl.jar"/>
-	<classpathentry kind="lib" path="lib/castor-1.1-cycle-xml.jar" sourcepath="C:/Documents and Settings/JimP/workspace-3.3/castor/src/main/java"/>
-	<classpathentry kind="lib" path="lib/JGoogleAnalytics_0.3.jar" sourcepath="/JGoogleAnalytics/src/main/java"/>
-	<classpathentry kind="lib" path="lib/vamsas-client.jar"/>
-	<classpathentry kind="lib" path="lib/commons-logging-1.1.1.jar"/>
-	<classpathentry kind="lib" path="lib/apache-mime4j-0.6.jar" sourcepath="G:/InstallsDir/Sources for Development/apache-mime4j-0.6-src.zip"/>
-	<classpathentry kind="lib" path="lib/httpclient-4.0.3.jar">
+	<classpathentry kind="output" path="bin/default"/>
+	<classpathentry output="bin/main" kind="src" path="src">
 		<attributes>
-			<attribute name="javadoc_location" value="file:/D:/InstallsDir/Sources for Development/httpconnect/httpcomponents-client-4.0.3/javadoc/"/>
+			<attribute name="gradle_scope" value="main"/>
+			<attribute name="gradle_used_by_scope" value=""/>
 		</attributes>
 	</classpathentry>
-	<classpathentry kind="lib" path="lib/httpcore-4.0.1.jar">
+	<classpathentry output="bin/test" kind="src" path="test">
 		<attributes>
-			<attribute name="javadoc_location" value="file:/D:/InstallsDir/Sources for Development/httpconnect/httpcomponents-client-4.0.3/javadoc/"/>
+			<attribute name="gradle_scope" value="test"/>
+			<attribute name="gradle_used_by_scope" value=""/>
+			<attribute name="test" value="true"/>
 		</attributes>
 	</classpathentry>
-	<classpathentry kind="lib" path="lib/httpmime-4.0.3.jar">
-		<attributes>
-			<attribute name="javadoc_location" value="file:/D:/InstallsDir/Sources for Development/httpconnect/httpcomponents-client-4.0.3/javadoc/"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="lib" path="lib/miglayout-4.0-swing.jar"/>
-	<classpathentry kind="lib" path="lib/jswingreader-0.3.jar" sourcepath="/jswingreader"/>
-	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="lib/jdas-1.0.4.jar"/>
-	<classpathentry kind="lib" path="lib/spring-core-3.0.5.RELEASE.jar"/>
-	<classpathentry kind="lib" path="lib/spring-web-3.0.5.RELEASE.jar"/>
-	<classpathentry kind="lib" path="lib/groovy-all-1.8.2.jar"/>
-	<classpathentry kind="lib" path="lib/min-jabaws-client-2.1.0.jar" sourcepath="/clustengine"/>
-	<classpathentry kind="lib" path="lib/json_simple-1.1.jar" sourcepath="/Users/jimp/Downloads/json_simple-1.1-all.zip"/>
-	<classpathentry kind="lib" path="lib/slf4j-api-1.7.7.jar"/>
-	<classpathentry kind="lib" path="lib/jsoup-1.8.1.jar"/>
-	<classpathentry kind="lib" path="lib/log4j-to-slf4j-2.0-rc2.jar"/>
-	<classpathentry kind="lib" path="lib/slf4j-log4j12-1.7.7.jar"/>
-	<classpathentry kind="lib" path="lib/VARNAv3-93.jar"/>
-	<classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
-	<classpathentry kind="lib" path="lib/quaqua-filechooser-only-8.0.jar"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
-	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/Plugin.jar"/>
-	<classpathentry kind="lib" path="lib/jersey-client-1.19.jar"/>
-	<classpathentry kind="lib" path="lib/jersey-core-1.19.jar"/>
-	<classpathentry kind="lib" path="lib/jsr311-api-1.1.1.jar"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.jar"/>
-	<classpathentry kind="lib" path="lib/jetty-server-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="lib/servlet-api-3.1.jar"/>
-	<classpathentry kind="lib" path="lib/jetty-util-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="lib/jetty-http-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="lib/jetty-io-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="lib/java-json.jar"/>
-	<classpathentry kind="lib" path="lib/Jmol-14.2.14_2015.06.11.jar"/>
-	<classpathentry kind="con" path="org.testng.TESTNG_CONTAINER"/>
-	<classpathentry kind="output" path="classes"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-11/"/>
+	<classpathentry kind="con" path="org.eclipse.buildship.core.gradleclasspathcontainer"/>
+	<classpathentry kind="output" path="bin/main"/>
+	<classpathentry kind="lib" path="help"/>
+	<classpathentry kind="lib" path="resources"/>
+	<classpathentry kind="lib" path="j11lib/jsoup-1.8.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jswingreader-0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/mail-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.servlet-api-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/httpclient-4.0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/regex.jar"/>
+	<classpathentry kind="lib" path="j11lib/getdown-core.jar"/>
+	<classpathentry kind="lib" path="j11lib/policy.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxb-api-java9.jar"/>
+	<classpathentry kind="lib" path="j11lib/JGoogleAnalytics_0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-http-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.activation-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-logging-1.1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/slf4j-log4j12-1.7.7.jar"/>
+	<classpathentry kind="lib" path="j11lib/i4jruntime.jar"/>
+	<classpathentry kind="lib" path="j11lib/miglayout-4.0-swing.jar"/>
+	<classpathentry kind="lib" path="j11lib/txw2.jar"/>
+	<classpathentry kind="lib" path="j11lib/jersey-json-1.19.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/quaqua-filechooser-only-8.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/VARNAv3-93.jar"/>
+	<classpathentry kind="lib" path="j11lib/groovy-2.5.6.jar"/>
+	<classpathentry kind="lib" path="j11lib/Jmol-14.29.17-no_netscape.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxb-runtime.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-discovery.jar"/>
+	<classpathentry kind="lib" path="j11lib/slf4j-api-1.7.7.jar"/>
+	<classpathentry kind="lib" path="j11lib/VAqua5-patch.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxws-api.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.xml.soap-api.jar"/>
+	<classpathentry kind="lib" path="j11lib/jsr311-api-1.1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/libquaqua-8.0.jnilib.jar"/>
+	<classpathentry kind="lib" path="j11lib/istack-commons-runtime.jar"/>
+	<classpathentry kind="lib" path="j11lib/stax-ex.jar"/>
+	<classpathentry kind="lib" path="j11lib/httpmime-4.0.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/biojava-core-4.1.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/libquaqua64-8.0.jnilib.jar"/>
+	<classpathentry kind="lib" path="j11lib/jabaws-min-client-2.2.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/jersey-client-1.19.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-io-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/intervalstore-v1.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/htsjdk-2.12.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/groovy-console-2.5.6.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-codec-1.3.jar"/>
+	<classpathentry kind="lib" path="j11lib/jaxws-rt-java9.jar"/>
+	<classpathentry kind="lib" path="j11lib/vamsas-client.jar"/>
+	<classpathentry kind="lib" path="j11lib/saaj-impl.jar"/>
+	<classpathentry kind="lib" path="j11lib/jersey-core-1.19.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-server-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/jetty-util-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="j11lib/xercesImpl.jar"/>
+	<classpathentry kind="lib" path="j11lib/FastInfoset.jar"/>
+	<classpathentry kind="lib" path="j11lib/commons-compress-1.18.jar"/>
+	<classpathentry kind="lib" path="j11lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="lib" path="j11lib/log4j-to-slf4j-2.0-rc2.jar"/>
+	<classpathentry kind="lib" path="j11lib/wsdl4j-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/httpcore-4.0.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/jhall.jar"/>
+	<classpathentry kind="lib" path="j11lib/stax2-api-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/gmbal-api-only-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.jws-api-1.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/axis.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.xml.rpc-api-1.1.2.jar"/>
+	<classpathentry kind="lib" path="j11lib/javax.annotation-api-MODULE.jar"/>
+	<classpathentry kind="lib" path="j11lib/java-json.jar"/>
+	<classpathentry kind="lib" path="j11lib/mimepull.jar"/>
+	<classpathentry kind="lib" path="j11lib/jfreesvg-2.1.jar"/>
+	<classpathentry kind="lib" path="j11lib/streambuffer.jar"/>
+	<classpathentry kind="lib" path="j11lib/apache-mime4j-0.6.jar"/>
+	<classpathentry kind="lib" path="j11lib/json_simple-1.1.jar"/>
 </classpath>