X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.classpath;h=8a4a0505303daae4b355d4d281f17794a298b9ea;hb=ee6db3e52520d26acea3f68886dd05b89c86b76f;hp=442795dcd6304344c2054ef5d4c24a39e8bef29f;hpb=64fb69927bb37d8773a75b684a3e7ab3f0c5c212;p=jalview.git

diff --git a/.classpath b/.classpath
index 442795d..8a4a050 100644
--- a/.classpath
+++ b/.classpath
@@ -1,6 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
 	<classpathentry kind="src" path="src"/>
+	<classpathentry kind="src" path="src2"/>
 	<classpathentry kind="src" path="utils"/>
 	<classpathentry kind="src" path="test"/>
 	<classpathentry kind="lib" path="lib/activation.jar"/>
@@ -36,29 +37,24 @@
 	<classpathentry kind="lib" path="lib/miglayout-4.0-swing.jar"/>
 	<classpathentry kind="lib" path="lib/jswingreader-0.3.jar" sourcepath="/jswingreader"/>
 	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="lib/Jmol-12.2.4.jar" sourcepath="/Users/jimp/Documents/e6-workspace-new/Jmol/src"/>
-	<classpathentry kind="lib" path="appletlib/JmolApplet-12.2.4.jar"/>
-	<classpathentry kind="lib" path="lib/jdas-1.0.4.jar"/>
 	<classpathentry kind="lib" path="lib/spring-core-3.0.5.RELEASE.jar"/>
 	<classpathentry kind="lib" path="lib/spring-web-3.0.5.RELEASE.jar"/>
-	<classpathentry kind="lib" path="lib/groovy-all-1.8.2.jar"/>
-	<classpathentry kind="lib" path="lib/min-jabaws-client-2.1.0.jar" sourcepath="/clustengine"/>
+	<classpathentry kind="lib" path="lib/jabaws-min-client-2.2.0.jar" sourcepath="/clustengine"/>
 	<classpathentry kind="lib" path="lib/json_simple-1.1.jar" sourcepath="/Users/jimp/Downloads/json_simple-1.1-all.zip"/>
 	<classpathentry kind="lib" path="lib/slf4j-api-1.7.7.jar"/>
 	<classpathentry kind="lib" path="lib/jsoup-1.8.1.jar"/>
 	<classpathentry kind="lib" path="lib/log4j-to-slf4j-2.0-rc2.jar"/>
 	<classpathentry kind="lib" path="lib/slf4j-log4j12-1.7.7.jar"/>
-	<classpathentry kind="lib" path="lib/VARNAv3-91.jar"/>
+	<classpathentry kind="lib" path="lib/VARNAv3-93.jar"/>
 	<classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
 	<classpathentry kind="lib" path="lib/quaqua-filechooser-only-8.0.jar"/>
+	<classpathentry kind="lib" path="lib/VAqua4.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
 	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/Plugin.jar"/>
 	<classpathentry kind="lib" path="lib/jersey-client-1.19.jar"/>
 	<classpathentry kind="lib" path="lib/jersey-core-1.19.jar"/>
-	<classpathentry kind="lib" path="lib/jersey-json-1.19.jar"/>
 	<classpathentry kind="lib" path="lib/jsr311-api-1.1.1.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.jar"/>
 	<classpathentry kind="lib" path="lib/jetty-server-9.2.10.v20150310.jar"/>
@@ -66,6 +62,13 @@
 	<classpathentry kind="lib" path="lib/jetty-util-9.2.10.v20150310.jar"/>
 	<classpathentry kind="lib" path="lib/jetty-http-9.2.10.v20150310.jar"/>
 	<classpathentry kind="lib" path="lib/jetty-io-9.2.10.v20150310.jar"/>
-	<classpathentry kind="lib" path="lib/commons-net-3.3.jar" sourcepath="/Users/tcnofoegbu/.m2/repository/commons-net/commons-net/3.3/commons-net-3.3-sources.jar"/>
+	<classpathentry kind="lib" path="lib/java-json.jar"/>
+	<classpathentry kind="lib" path="lib/Jmol-14.6.4_2016.10.26.jar"/>
+	<classpathentry kind="con" path="org.testng.TESTNG_CONTAINER"/>
+	<classpathentry kind="lib" path="lib/biojava-core-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/htsjdk-2.12.0.jar"/>
+	<classpathentry kind="lib" path="lib/groovy-all-2.4.12-indy.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="output" path="classes"/>
 </classpath>