X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.classpath;h=c85feafb0c07b76af9081cdf398d34569e7e98fc;hb=refs%2Fheads%2Fmerges%2FJAL-2906_update2_11_from_2_10_4;hp=f76d550fb01b18979e058bc798df8abd832f4f25;hpb=c5677e9860106a821a3e6e0429b20ede7b9a732a;p=jalview.git

diff --git a/.classpath b/.classpath
index f76d550..c85feaf 100644
--- a/.classpath
+++ b/.classpath
@@ -3,19 +3,16 @@
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="utils"/>
 	<classpathentry kind="src" path="test"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
 	<classpathentry kind="lib" path="lib/activation.jar"/>
 	<classpathentry kind="lib" path="lib/axis.jar" sourcepath="D:/axis-1_2RC2-src/axis-1_2RC2"/>
 	<classpathentry kind="lib" path="lib/commons-discovery.jar"/>
 	<classpathentry kind="lib" path="lib/jaxrpc.jar"/>
 	<classpathentry kind="lib" path="lib/jhall.jar"/>
-	<classpathentry kind="lib" path="lib/log4j-1.2.8.jar"/>
 	<classpathentry kind="lib" path="lib/mail.jar"/>
 	<classpathentry kind="lib" path="lib/regex.jar"/>
 	<classpathentry kind="lib" path="lib/saaj.jar"/>
 	<classpathentry kind="lib" path="lib/wsdl4j.jar"/>
 	<classpathentry kind="lib" path="lib/xercesImpl.jar"/>
-	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
 	<classpathentry kind="lib" path="lib/castor-1.1-cycle-xml.jar" sourcepath="C:/Documents and Settings/JimP/workspace-3.3/castor/src/main/java"/>
 	<classpathentry kind="lib" path="lib/JGoogleAnalytics_0.3.jar" sourcepath="/JGoogleAnalytics/src/main/java"/>
 	<classpathentry kind="lib" path="lib/vamsas-client.jar"/>
@@ -39,15 +36,38 @@
 	<classpathentry kind="lib" path="lib/miglayout-4.0-swing.jar"/>
 	<classpathentry kind="lib" path="lib/jswingreader-0.3.jar" sourcepath="/jswingreader"/>
 	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="lib/min-jaba-client-2.0.jar" sourcepath="/clustengine2"/>
-	<classpathentry kind="lib" path="lib/Jmol-12.2.4.jar"/>
-	<classpathentry kind="lib" path="appletlib/JmolApplet-12.2.4.jar"/>
 	<classpathentry kind="lib" path="lib/jdas-1.0.4.jar"/>
 	<classpathentry kind="lib" path="lib/spring-core-3.0.5.RELEASE.jar"/>
 	<classpathentry kind="lib" path="lib/spring-web-3.0.5.RELEASE.jar"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.jar"/>
+	<classpathentry kind="lib" path="lib/jabaws-min-client-2.2.0.jar" sourcepath="/clustengine"/>
+	<classpathentry kind="lib" path="lib/json_simple-1.1.jar" sourcepath="/Users/jimp/Downloads/json_simple-1.1-all.zip"/>
+	<classpathentry kind="lib" path="lib/slf4j-api-1.7.7.jar"/>
+	<classpathentry kind="lib" path="lib/jsoup-1.8.1.jar"/>
+	<classpathentry kind="lib" path="lib/log4j-to-slf4j-2.0-rc2.jar"/>
+	<classpathentry kind="lib" path="lib/slf4j-log4j12-1.7.7.jar"/>
+	<classpathentry kind="lib" path="lib/VARNAv3-93.jar"/>
+	<classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
+	<classpathentry kind="lib" path="lib/quaqua-filechooser-only-8.0.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
+	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
-	<classpathentry kind="lib" path="lib/VARNAv3-9-dev.jar" sourcepath="/VARNA3-1"/>
-	<classpathentry kind="lib" path="/usr/lib/jvm/java-7-oracle/jre/lib/plugin.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/Plugin.jar"/>
+	<classpathentry kind="lib" path="lib/jersey-client-1.19.jar"/>
+	<classpathentry kind="lib" path="lib/jersey-core-1.19.jar"/>
+	<classpathentry kind="lib" path="lib/jsr311-api-1.1.1.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-server-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/servlet-api-3.1.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-util-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-http-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-io-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/java-json.jar"/>
+	<classpathentry kind="lib" path="lib/Jmol-14.6.4_2016.10.26.jar"/>
+	<classpathentry kind="con" path="org.testng.TESTNG_CONTAINER"/>
+	<classpathentry kind="lib" path="lib/biojava-core-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
+	<classpathentry kind="lib" path="lib/htsjdk-2.12.0.jar"/>
+	<classpathentry kind="lib" path="lib/groovy-all-2.4.12-indy.jar"/>
 	<classpathentry kind="output" path="classes"/>
 </classpath>