X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.classpath;h=cacda5a15a89df592ada2374ab9b5064b4bc1148;hb=refs%2Fheads%2Fmerge%2Fdevelop_feature%2FJAL-3141_backupfiles_for211;hp=3a05b4745b8b62d92cd1dc07a2ff609a001cbace;hpb=67da9fd9849b779bfb02e917a5769680a56b0de6;p=jalview.git

diff --git a/.classpath b/.classpath
index 3a05b47..cacda5a 100644
--- a/.classpath
+++ b/.classpath
@@ -13,7 +13,6 @@
 	<classpathentry kind="lib" path="lib/saaj.jar"/>
 	<classpathentry kind="lib" path="lib/wsdl4j.jar"/>
 	<classpathentry kind="lib" path="lib/xercesImpl.jar"/>
-	<classpathentry kind="lib" path="lib/castor-1.1-cycle-xml.jar" sourcepath="C:/Documents and Settings/JimP/workspace-3.3/castor/src/main/java"/>
 	<classpathentry kind="lib" path="lib/JGoogleAnalytics_0.3.jar" sourcepath="/JGoogleAnalytics/src/main/java"/>
 	<classpathentry kind="lib" path="lib/vamsas-client.jar"/>
 	<classpathentry kind="lib" path="lib/commons-logging-1.1.1.jar"/>
@@ -36,7 +35,6 @@
 	<classpathentry kind="lib" path="lib/miglayout-4.0-swing.jar"/>
 	<classpathentry kind="lib" path="lib/jswingreader-0.3.jar" sourcepath="/jswingreader"/>
 	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="lib/jdas-1.0.4.jar"/>
 	<classpathentry kind="lib" path="lib/spring-core-3.0.5.RELEASE.jar"/>
 	<classpathentry kind="lib" path="lib/spring-web-3.0.5.RELEASE.jar"/>
 	<classpathentry kind="lib" path="lib/jabaws-min-client-2.2.0.jar" sourcepath="/clustengine"/>
@@ -48,8 +46,8 @@
 	<classpathentry kind="lib" path="lib/VARNAv3-93.jar"/>
 	<classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
 	<classpathentry kind="lib" path="lib/quaqua-filechooser-only-8.0.jar"/>
-	<classpathentry kind="lib" path="lib/htsjdk-1.133.jar"/>
-	<classpathentry kind="lib" path="lib/VAqua4.jar"/>
+	<classpathentry kind="lib" path="lib/VAqua5-patch.jar"/>
+	<classpathentry kind="lib" path="utils/classgraph-4.1.6.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
 	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
@@ -68,6 +66,7 @@
 	<classpathentry kind="con" path="org.testng.TESTNG_CONTAINER"/>
 	<classpathentry kind="lib" path="lib/biojava-core-4.1.0.jar"/>
 	<classpathentry kind="lib" path="lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/htsjdk-2.12.0.jar"/>
 	<classpathentry kind="lib" path="lib/groovy-all-2.4.12-indy.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
 	<classpathentry kind="output" path="classes"/>