X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.classpath;h=d3aa906386cd599f1196fda223148702d20a97e0;hb=40d1e623b7f1be3a25ba03172ad66c860f79f21e;hp=549b185d34ece5980d0232e64206b48c39efc3a3;hpb=87575af0fe2667c0b6c4a9be6990e975e926ba1e;p=jalview.git

diff --git a/.classpath b/.classpath
index 549b185..d3aa906 100644
--- a/.classpath
+++ b/.classpath
@@ -1,8 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
 	<classpathentry kind="src" path="src"/>
-	<classpathentry kind="src" path="utils"/>
+	<classpathentry kind="src" path="src2"/>
 	<classpathentry kind="src" path="test"/>
+	<classpathentry kind="src" path="utils"/>
 	<classpathentry kind="lib" path="lib/activation.jar"/>
 	<classpathentry kind="lib" path="lib/axis.jar" sourcepath="D:/axis-1_2RC2-src/axis-1_2RC2"/>
 	<classpathentry kind="lib" path="lib/commons-discovery.jar"/>
@@ -13,7 +14,6 @@
 	<classpathentry kind="lib" path="lib/saaj.jar"/>
 	<classpathentry kind="lib" path="lib/wsdl4j.jar"/>
 	<classpathentry kind="lib" path="lib/xercesImpl.jar"/>
-	<classpathentry kind="lib" path="lib/castor-1.1-cycle-xml.jar" sourcepath="C:/Documents and Settings/JimP/workspace-3.3/castor/src/main/java"/>
 	<classpathentry kind="lib" path="lib/JGoogleAnalytics_0.3.jar" sourcepath="/JGoogleAnalytics/src/main/java"/>
 	<classpathentry kind="lib" path="lib/vamsas-client.jar"/>
 	<classpathentry kind="lib" path="lib/commons-logging-1.1.1.jar"/>
@@ -36,9 +36,6 @@
 	<classpathentry kind="lib" path="lib/miglayout-4.0-swing.jar"/>
 	<classpathentry kind="lib" path="lib/jswingreader-0.3.jar" sourcepath="/jswingreader"/>
 	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="lib/jdas-1.0.4.jar"/>
-	<classpathentry kind="lib" path="lib/spring-core-3.0.5.RELEASE.jar"/>
-	<classpathentry kind="lib" path="lib/spring-web-3.0.5.RELEASE.jar"/>
 	<classpathentry kind="lib" path="lib/jabaws-min-client-2.2.0.jar" sourcepath="/clustengine"/>
 	<classpathentry kind="lib" path="lib/json_simple-1.1.jar" sourcepath="/Users/jimp/Downloads/json_simple-1.1-all.zip"/>
 	<classpathentry kind="lib" path="lib/slf4j-api-1.7.7.jar"/>
@@ -48,8 +45,8 @@
 	<classpathentry kind="lib" path="lib/VARNAv3-93.jar"/>
 	<classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
 	<classpathentry kind="lib" path="lib/quaqua-filechooser-only-8.0.jar"/>
-	<classpathentry kind="lib" path="lib/htsjdk-1.133.jar"/>
-	<classpathentry kind="lib" path="lib/VAqua5.jar"/>
+	<classpathentry kind="lib" path="lib/VAqua5-patch.jar"/>
+	<classpathentry kind="lib" path="utils/classgraph-4.1.6.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
 	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
@@ -64,11 +61,21 @@
 	<classpathentry kind="lib" path="lib/jetty-http-9.2.10.v20150310.jar"/>
 	<classpathentry kind="lib" path="lib/jetty-io-9.2.10.v20150310.jar"/>
 	<classpathentry kind="lib" path="lib/java-json.jar"/>
-	<classpathentry kind="lib" path="lib/Jmol-14.6.4_2016.10.26.jar"/>
-	<classpathentry kind="con" path="org.testng.TESTNG_CONTAINER"/>
 	<classpathentry kind="lib" path="lib/biojava-core-4.1.0.jar"/>
 	<classpathentry kind="lib" path="lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/htsjdk-2.12.0.jar"/>
 	<classpathentry kind="lib" path="lib/groovy-all-2.4.12-indy.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
+	<classpathentry exported="true" kind="con" path="GROOVY_DSL_SUPPORT"/>
+	<classpathentry kind="lib" path="lib/Jmol-14.29.17.jar"/>
+	<classpathentry kind="lib" path="utils/testnglibs/bsh-2.0b4.jar"/>
+	<classpathentry kind="lib" path="utils/testnglibs/guava-base-r03.jar"/>
+	<classpathentry kind="lib" path="utils/testnglibs/guava-collections-r03.jar"/>
+	<classpathentry kind="lib" path="utils/testnglibs/jcommander.jar"/>
+	<classpathentry kind="lib" path="utils/testnglibs/junit-4.12.jar"/>
+	<classpathentry kind="lib" path="utils/testnglibs/snakeyaml.jar"/>
+	<classpathentry kind="lib" path="utils/testnglibs/testng-sources.jar"/>
+	<classpathentry kind="lib" path="utils/testnglibs/testng.jar"/>
+	<classpathentry kind="lib" path="lib/intervalstore-v1.1.jar"/>
 	<classpathentry kind="output" path="classes"/>
 </classpath>