X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.classpath;h=d704f10df291c9cd431c2884c81cd4e6b0ef07bd;hb=refs%2Fheads%2Fbugs%2FJAL-2780_JAL-2781_pdbnegativenums;hp=3324c5f75d9d2cf96367888f81fd0080f0ad768f;hpb=c42398f840e2a6709c5ccc45f84de2a12011c90a;p=jalview.git

diff --git a/.classpath b/.classpath
index 3324c5f..d704f10 100644
--- a/.classpath
+++ b/.classpath
@@ -2,28 +2,22 @@
 <classpath>
 	<classpathentry kind="src" path="src"/>
 	<classpathentry kind="src" path="utils"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="src" path="test"/>
 	<classpathentry kind="lib" path="lib/activation.jar"/>
 	<classpathentry kind="lib" path="lib/axis.jar" sourcepath="D:/axis-1_2RC2-src/axis-1_2RC2"/>
 	<classpathentry kind="lib" path="lib/commons-discovery.jar"/>
 	<classpathentry kind="lib" path="lib/jaxrpc.jar"/>
 	<classpathentry kind="lib" path="lib/jhall.jar"/>
-	<classpathentry kind="lib" path="lib/log4j-1.2.8.jar"/>
 	<classpathentry kind="lib" path="lib/mail.jar"/>
 	<classpathentry kind="lib" path="lib/regex.jar"/>
 	<classpathentry kind="lib" path="lib/saaj.jar"/>
 	<classpathentry kind="lib" path="lib/wsdl4j.jar"/>
 	<classpathentry kind="lib" path="lib/xercesImpl.jar"/>
-	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
 	<classpathentry kind="lib" path="lib/castor-1.1-cycle-xml.jar" sourcepath="C:/Documents and Settings/JimP/workspace-3.3/castor/src/main/java"/>
 	<classpathentry kind="lib" path="lib/JGoogleAnalytics_0.3.jar" sourcepath="/JGoogleAnalytics/src/main/java"/>
 	<classpathentry kind="lib" path="lib/vamsas-client.jar"/>
-	<classpathentry kind="lib" path="lib/min-jaba-client.jar" sourcepath="/clustengine"/>
-	<classpathentry kind="lib" path="lib/Jmol-12.1.13.jar" sourcepath="/Jmol"/>
-	<classpathentry kind="lib" path="appletlib/JmolApplet-12.1.13.jar"/>
 	<classpathentry kind="lib" path="lib/commons-logging-1.1.1.jar"/>
 	<classpathentry kind="lib" path="lib/apache-mime4j-0.6.jar" sourcepath="G:/InstallsDir/Sources for Development/apache-mime4j-0.6-src.zip"/>
-	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
 	<classpathentry kind="lib" path="lib/httpclient-4.0.3.jar">
 		<attributes>
 			<attribute name="javadoc_location" value="file:/D:/InstallsDir/Sources for Development/httpconnect/httpcomponents-client-4.0.3/javadoc/"/>
@@ -39,8 +33,41 @@
 			<attribute name="javadoc_location" value="file:/D:/InstallsDir/Sources for Development/httpconnect/httpcomponents-client-4.0.3/javadoc/"/>
 		</attributes>
 	</classpathentry>
+	<classpathentry kind="lib" path="lib/miglayout-4.0-swing.jar"/>
+	<classpathentry kind="lib" path="lib/jswingreader-0.3.jar" sourcepath="/jswingreader"/>
+	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
+	<classpathentry kind="lib" path="lib/jdas-1.0.4.jar"/>
+	<classpathentry kind="lib" path="lib/spring-core-3.0.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="lib/spring-web-3.0.5.RELEASE.jar"/>
+	<classpathentry kind="lib" path="lib/jabaws-min-client-2.2.0.jar" sourcepath="/clustengine"/>
+	<classpathentry kind="lib" path="lib/json_simple-1.1.jar" sourcepath="/Users/jimp/Downloads/json_simple-1.1-all.zip"/>
+	<classpathentry kind="lib" path="lib/slf4j-api-1.7.7.jar"/>
+	<classpathentry kind="lib" path="lib/jsoup-1.8.1.jar"/>
+	<classpathentry kind="lib" path="lib/log4j-to-slf4j-2.0-rc2.jar"/>
+	<classpathentry kind="lib" path="lib/slf4j-log4j12-1.7.7.jar"/>
+	<classpathentry kind="lib" path="lib/VARNAv3-93.jar"/>
+	<classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
+	<classpathentry kind="lib" path="lib/quaqua-filechooser-only-8.0.jar"/>
+	<classpathentry kind="lib" path="lib/htsjdk-1.133.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
+	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/Plugin.jar"/>
+	<classpathentry kind="lib" path="lib/jersey-client-1.19.jar"/>
+	<classpathentry kind="lib" path="lib/jersey-core-1.19.jar"/>
+	<classpathentry kind="lib" path="lib/jsr311-api-1.1.1.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.jar"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin.java"/>
-	<classpathentry kind="lib" path="lib/VARNAv3-8b.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-server-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/servlet-api-3.1.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-util-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-http-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/jetty-io-9.2.10.v20150310.jar"/>
+	<classpathentry kind="lib" path="lib/java-json.jar"/>
+	<classpathentry kind="lib" path="lib/Jmol-14.6.4_2016.10.26.jar"/>
+	<classpathentry kind="con" path="org.testng.TESTNG_CONTAINER"/>
+	<classpathentry kind="lib" path="lib/biojava-core-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/groovy-all-2.4.12-indy.jar"/>
 	<classpathentry kind="output" path="classes"/>
 </classpath>