X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.idea%2Fworkspace.xml;h=3169d8a9b0abf55a21648fb2e073125d144a082c;hb=d79547479229fba5f6178897eac3fee0376827cc;hp=c4b4cc621c8a3ebeabfa81abd72b8183adab68b0;hpb=3b29344a55400698c1ab1f89ca2ae85caba1c69f;p=jabaws.git

diff --git a/.idea/workspace.xml b/.idea/workspace.xml
index c4b4cc6..3169d8a 100644
--- a/.idea/workspace.xml
+++ b/.idea/workspace.xml
@@ -1,37 +1,40 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
+  <component name="AnalysisUIOptions">
+    <option name="CUSTOM_SCOPE_NAME" value="Hierarchy of compbio.data.sequence.Alignment" />
+    <option name="ANALYSIS_IN_BACKGROUND" value="true" />
+  </component>
   <component name="ChangeListManager">
     <list default="true" id="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" name="Default" comment="">
-      <change type="NEW" beforePath="" afterPath="$PROJECT_DIR$/.idea/ant.xml" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/website/archive/full-jaba-client-2.0.jar" afterPath="$PROJECT_DIR$/website/archive/full-jaba-client-2.0.jar" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/website/archive/jaba-no-binaries.war" afterPath="$PROJECT_DIR$/website/archive/jaba-no-binaries.war" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/website/archive/jaba.war" afterPath="$PROJECT_DIR$/website/archive/jaba.war" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/ExecutionStatistic/log/log.ctrl" afterPath="$PROJECT_DIR$/ExecutionStatistic/log/log.ctrl" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/ExecutionStatistic/log/log10.dat" afterPath="$PROJECT_DIR$/ExecutionStatistic/log/log10.dat" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/ExecutionStatistic/log/logmirror.ctrl" afterPath="$PROJECT_DIR$/ExecutionStatistic/log/logmirror.ctrl" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/.classpath" afterPath="$PROJECT_DIR$/.classpath" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/workspace.xml" afterPath="$PROJECT_DIR$/.idea/workspace.xml" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/build.xml" afterPath="$PROJECT_DIR$/build.xml" />
     </list>
     <ignored path="jabaws-dev.iws" />
     <ignored path=".idea/workspace.xml" />
-    <file path="/Dummy.txt" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364571839570" ignored="false" />
-    <file path="$PROJECT_DIR$/web/WEB-INF/web.xml" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364569053673" ignored="false" />
-    <file path="$PROJECT_DIR$/../../jaba-git2/jabaws-dev/webservices/compbio/ws/server/JronnWS.java" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364571910193" ignored="false" />
-    <file path="$PROJECT_DIR$/../../jaba-git2/jabaws-dev/testsrc/compbio/runner/msa/ClustalOTester.java" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364569115977" ignored="false" />
+    <ignored path="$PROJECT_DIR$/../out-jabaws-dev/" />
+    <option name="EXCLUDED_CONVERTED_TO_IGNORED" value="true" />
     <option name="TRACKING_ENABLED" value="true" />
     <option name="SHOW_DIALOG" value="false" />
     <option name="HIGHLIGHT_CONFLICTS" value="true" />
     <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
     <option name="LAST_RESOLUTION" value="IGNORE" />
   </component>
-  <component name="ChangesViewManager" flattened_view="true" show_ignored="false" />
+  <component name="Commander">
+    <leftPanel />
+    <rightPanel />
+    <splitter proportion="0.5" />
+  </component>
   <component name="CreatePatchCommitExecutor">
     <option name="PATCH_PATH" value="" />
   </component>
-  <component name="DaemonCodeAnalyzer">
-    <disable_hints />
+  <component name="DatabaseView">
+    <flatten value="false" />
+    <groupTables value="false" />
+    <sortChildren value="false" />
   </component>
   <component name="DebuggerManager">
-    <ui_properties default_suspend_policy="SuspendAll" default_condition_enabled="true" />
-    <breakpoint_any default_suspend_policy="SuspendAll" default_condition_enabled="true">
+    <breakpoint_any default_suspend_policy="SuspendAll" default_condition_enabled="true" converted="true">
       <breakpoint>
         <option name="NOTIFY_CAUGHT" value="true" />
         <option name="NOTIFY_UNCAUGHT" value="true" />
@@ -65,73 +68,94 @@
         <option name="LOG_MESSAGE" value="" />
       </breakpoint>
     </breakpoint_any>
-    <breakpoint_rules />
-    <ui_properties />
+    <ui_properties converted="true" />
+    <breakpoint_rules converted="true" />
   </component>
   <component name="ExecutionTargetManager" SELECTED_TARGET="default_target" />
   <component name="FavoritesManager">
     <favorites_list name="jabaws-dev" />
   </component>
   <component name="FileEditorManager">
-    <leaf>
-      <file leaf-file-name="LimitsManager.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/datamodel/compbio/metadata/LimitsManager.java">
+    <leaf SIDE_TABS_SIZE_LIMIT_KEY="300">
+      <file leaf-file-name="template_header.jsp" pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/website/template_header.jsp">
           <provider selected="true" editor-type-id="text-editor">
-            <state line="27" column="19" selection-start="1057" selection-end="1057" vertical-scroll-proportion="0.0">
-              <folding />
+            <state relative-caret-position="278">
+              <caret line="121" column="28" lean-forward="false" selection-start-line="121" selection-start-column="28" selection-end-line="121" selection-end-column="28" />
+              <folding>
+                <marker date="1491927253000" expanded="true" signature="6644:6648" ph="..." />
+              </folding>
             </state>
           </provider>
         </entry>
       </file>
-      <file leaf-file-name="Configurator.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/engine/compbio/engine/Configurator.java">
+      <file leaf-file-name="Joblist.jsp" pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/website/statpages/Joblist.jsp">
           <provider selected="true" editor-type-id="text-editor">
-            <state line="50" column="59" selection-start="1937" selection-end="1937" vertical-scroll-proportion="0.0">
+            <state relative-caret-position="-846">
+              <caret line="0" column="0" lean-forward="false" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
               <folding />
             </state>
           </provider>
         </entry>
       </file>
-      <file leaf-file-name="RegistryWS.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/webservices/compbio/ws/server/RegistryWS.java">
+      <file leaf-file-name="MonthlySummary.jsp" pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/website/statpages/MonthlySummary.jsp">
           <provider selected="true" editor-type-id="text-editor">
-            <state line="29" column="25" selection-start="1110" selection-end="1110" vertical-scroll-proportion="0.0">
+            <state relative-caret-position="650">
+              <caret line="99" column="143" lean-forward="false" selection-start-line="99" selection-start-column="143" selection-end-line="99" selection-end-column="143" />
               <folding />
             </state>
           </provider>
         </entry>
       </file>
-      <file leaf-file-name="AnnualStat.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/webservices/compbio/stat/servlet/AnnualStat.java">
+      <file leaf-file-name="download.jsp" pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/website/download.jsp">
+          <provider selected="true" editor-type-id="text-editor">
+            <state relative-caret-position="276">
+              <caret line="174" column="167" lean-forward="false" selection-start-line="174" selection-start-column="167" selection-end-line="174" selection-end-column="167" />
+              <folding>
+                <marker date="1491927221000" expanded="true" signature="12213:12354" ph="..." />
+              </folding>
+            </state>
+          </provider>
+        </entry>
+      </file>
+      <file leaf-file-name="Executable.properties" pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/conf/Executable.properties">
           <provider selected="true" editor-type-id="text-editor">
-            <state line="38" column="27" selection-start="1385" selection-end="1385" vertical-scroll-proportion="0.0">
+            <state relative-caret-position="-1988">
+              <caret line="64" column="78" lean-forward="false" selection-start-line="64" selection-start-column="29" selection-end-line="64" selection-end-column="78" />
               <folding />
             </state>
           </provider>
         </entry>
       </file>
-      <file leaf-file-name="MafftTester.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/testsrc/compbio/runner/msa/MafftTester.java">
+      <file leaf-file-name="Executable.properties.dundee" pinned="false" current-in-tab="true">
+        <entry file="file://$PROJECT_DIR$/conf/Executable.properties.dundee">
           <provider selected="true" editor-type-id="text-editor">
-            <state line="20" column="22" selection-start="851" selection-end="851" vertical-scroll-proportion="0.0">
+            <state relative-caret-position="-2948">
+              <caret line="0" column="0" lean-forward="false" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
               <folding />
             </state>
           </provider>
         </entry>
       </file>
-      <file leaf-file-name="JronnWS.java" pinned="false" current="true" current-in-tab="true">
-        <entry file="file://$PROJECT_DIR$/webservices/compbio/ws/server/JronnWS.java">
+      <file leaf-file-name="Engine.cluster.properties" pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/conf/Engine.cluster.properties">
           <provider selected="true" editor-type-id="text-editor">
-            <state line="34" column="48" selection-start="1369" selection-end="1369" vertical-scroll-proportion="0.21212122">
+            <state relative-caret-position="255">
+              <caret line="17" column="24" lean-forward="true" selection-start-line="17" selection-start-column="24" selection-end-line="17" selection-end-column="24" />
               <folding />
             </state>
           </provider>
         </entry>
       </file>
-      <file leaf-file-name="Alignment.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/datamodel/compbio/data/sequence/Alignment.java">
+      <file leaf-file-name="template_footer.jsp" pinned="false" current-in-tab="false">
+        <entry file="file://$PROJECT_DIR$/website/template_footer.jsp">
           <provider selected="true" editor-type-id="text-editor">
-            <state line="43" column="7" selection-start="1409" selection-end="1409" vertical-scroll-proportion="0.0">
+            <state relative-caret-position="264">
+              <caret line="68" column="28" lean-forward="false" selection-start-line="68" selection-start-column="28" selection-end-line="68" selection-end-column="28" />
               <folding />
             </state>
           </provider>
@@ -139,6 +163,52 @@
       </file>
     </leaf>
   </component>
+  <component name="FindInProjectRecents">
+    <findStrings>
+      <find>http://webserv1.cluster.lifesci.dundee.ac.uk:8089/jabaws/ProbconsWS?wsdl</find>
+      <find>http://webserv1.cluster.lifesci.dundee.ac.uk:8089S?wsdl</find>
+      <find>http://webserv1.cluster.lifesci.dundee.ac.uk:8089</find>
+      <find>localhost</find>
+      <find>http://localhost:8080</find>
+      <find>Preset Huge alignments</find>
+      <find>Huge alignments</find>
+      <find>with</find>
+      <find>ResultNotAvailableException</find>
+      <find>test_outfile</find>
+      <find>FileNotFoundException</find>
+      <find>PStruct</find>
+      <find>mode</find>
+      <find>readStatisticsClusterExecution</find>
+      <find>testsrc</find>
+      <find>c</find>
+      <find>test_group_runner</find>
+      <find>singleTest</find>
+      <find>test_group_runner2</find>
+      <find>-c</find>
+      <find>test.</find>
+      <find>jaba.war</find>
+      <find>website</find>
+      <find>js</find>
+      <find>man_</find>
+      <find>man</find>
+      <find>ma</find>
+      <find>m</find>
+      <find>j</find>
+      <find>jsp</find>
+    </findStrings>
+    <replaceStrings>
+      <replace>2.2</replace>
+      <replace>target=&quot;1.8&quot;</replace>
+      <replace>webapps/jabaws</replace>
+      <replace>test_group_runner</replace>
+      <replace>test_group_runner2</replace>
+    </replaceStrings>
+    <dirStrings>
+      <dir>$PROJECT_DIR$</dir>
+      <dir>$PROJECT_DIR$/testsrc</dir>
+      <dir>$PROJECT_DIR$/website/statpages</dir>
+    </dirStrings>
+  </component>
   <component name="FindManager">
     <FindUsagesManager>
       <setting name="OPEN_NEW_TAB" value="false" />
@@ -148,32 +218,109 @@
     <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
   </component>
   <component name="GitLogSettings">
+    <option name="myStructureFilterPaths" />
     <option name="myDateState">
       <MyDateState />
     </option>
   </component>
+  <component name="GradleLocalSettings">
+    <option name="externalProjectsViewState">
+      <projects_view />
+    </option>
+  </component>
+  <component name="IdeDocumentHistory">
+    <option name="CHANGED_PATHS">
+      <list>
+        <option value="$PROJECT_DIR$/webservices/compbio/data/msa/Category.java" />
+        <option value="$PROJECT_DIR$/datamodel/compbio/data/sequence/Alignment.java" />
+        <option value="$PROJECT_DIR$/datamodel/compbio/data/sequence/Program.java" />
+        <option value="$PROJECT_DIR$/datamodel/compbio/data/sequence/SequenceUtil.java" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/data/sequence/SequenceUtilTester.java" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/runner/msa/TcoffeeTester.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/client/Jws2Client.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/client/ServicesUtil.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/client/WSTester.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/server/WSUtil.java" />
+        <option value="$PROJECT_DIR$/runner/compbio/runner/predictors/Jpred.java" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/runner/predictors/JpredTester.java" />
+        <option value="$PROJECT_DIR$/datamodel/compbio/data/sequence/JpredAlignment.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/server/JpredWS.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/server/resource/JpredWS.wsdl" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/client/Services.java" />
+        <option value="$PROJECT_DIR$/website/man_docs.jsp" />
+        <option value="$PROJECT_DIR$/conf/Engine.cluster.properties" />
+        <option value="$PROJECT_DIR$/conf/Engine.local.properties" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/client/AAConClient.java" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/ws/server/RegistryWSTester.java" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/ws/client/WSTesterTester.java" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/ws/client/TestRNAalifoldWS.java" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/ws/client/TestIUPredWS.java" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/ws/client/TestAAConWS.java" />
+        <option value="$PROJECT_DIR$/testsrc/testdata/MuscleLimits.xml" />
+        <option value="$PROJECT_DIR$/datamodel/compbio/data/sequence/RNAStructReader.java" />
+        <option value="$PROJECT_DIR$/conf/settings/RNAalifoldParameters.xml" />
+        <option value="$PROJECT_DIR$/conf/settings/TcoffeeParameters.xml" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/runner/structure/RNAalifoldParametersTester.java" />
+        <option value="$PROJECT_DIR$/conf/settings/TcoffeePresets.xml" />
+        <option value="$PROJECT_DIR$/binaries/src/setexecflag.sh" />
+        <option value="$PROJECT_DIR$/conf/Executable.properties" />
+        <option value="$PROJECT_DIR$/binaries/src/compilebin.sh" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/runner/msa/ClustalOTester.java" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/runner/msa/TcoffeeParametersTester.java" />
+        <option value="$PROJECT_DIR$/testsrc/compbio/metadata/AllTestSuit.java" />
+        <option value="$PROJECT_DIR$/docs/generate_man.sh" />
+        <option value="$PROJECT_DIR$/website/man_serverwar.jsp" />
+        <option value="$PROJECT_DIR$/website/man_pages_old/man_stats.jsp" />
+        <option value="$PROJECT_DIR$/website/man_about.jsp" />
+        <option value="$PROJECT_DIR$/website/man_pages_old/man_about.jsp" />
+        <option value="$PROJECT_DIR$/website/index.jsp" />
+        <option value="$PROJECT_DIR$/website/about.jsp" />
+        <option value="$PROJECT_DIR$/website/getting_started.jsp" />
+        <option value="$PROJECT_DIR$/website/template_footer.jsp" />
+        <option value="$PROJECT_DIR$/build.xml" />
+        <option value="$PROJECT_DIR$/website/statpages/ServicesStatus.jsp" />
+        <option value="$PROJECT_DIR$/website/statpages/MonthlySummary.jsp" />
+        <option value="$PROJECT_DIR$/website/template_header.jsp" />
+        <option value="$PROJECT_DIR$/website/download.jsp" />
+      </list>
+    </option>
+  </component>
+  <component name="JsBuildToolGruntFileManager" detection-done="true" sorting="DEFINITION_ORDER" />
+  <component name="JsBuildToolPackageJson" detection-done="true" sorting="DEFINITION_ORDER" />
+  <component name="JsGulpfileManager">
+    <detection-done>true</detection-done>
+    <sorting>DEFINITION_ORDER</sorting>
+  </component>
   <component name="ProjectFrameBounds">
-    <option name="x" value="1946" />
+    <option name="x" value="1439" />
+    <option name="y" value="23" />
     <option name="width" value="1920" />
-    <option name="height" value="1152" />
-  </component>
-  <component name="ProjectLevelVcsManager" settingsEditedManually="false">
-    <OptionsSetting value="true" id="Add" />
-    <OptionsSetting value="true" id="Remove" />
-    <OptionsSetting value="true" id="Checkout" />
-    <OptionsSetting value="true" id="Update" />
-    <OptionsSetting value="true" id="Status" />
-    <OptionsSetting value="true" id="Edit" />
-    <OptionsSetting value="true" id="Undo Check Out" />
-    <OptionsSetting value="true" id="Get Latest Version" />
+    <option name="height" value="1140" />
+  </component>
+  <component name="ProjectInspectionProfilesVisibleTreeState">
+    <entry key="Project Default">
+      <profile-state>
+        <expanded-state>
+          <State>
+            <id />
+          </State>
+        </expanded-state>
+        <selected-state>
+          <State>
+            <id>Abstraction issues</id>
+          </State>
+        </selected-state>
+      </profile-state>
+    </entry>
+  </component>
+  <component name="ProjectLevelVcsManager">
     <ConfirmationsSetting value="1" id="Add" />
-    <ConfirmationsSetting value="0" id="Remove" />
   </component>
   <component name="ProjectReloadState">
     <option name="STATE" value="0" />
   </component>
   <component name="ProjectView">
-    <navigator currentView="ProjectPane" proportions="" version="1" splitterProportion="0.5">
+    <navigator currentView="ProjectPane" proportions="" version="1">
       <flattenPackages />
       <showMembers />
       <showModules />
@@ -183,10 +330,11 @@
       <autoscrollToSource />
       <autoscrollFromSource />
       <sortByType />
+      <manualOrder />
+      <foldersAlwaysOnTop value="true" />
     </navigator>
     <panes>
       <pane id="PackagesPane" />
-      <pane id="Scope" />
       <pane id="ProjectPane">
         <subPane>
           <PATH>
@@ -195,17 +343,7 @@
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
             </PATH_ELEMENT>
             <PATH_ELEMENT>
-              <option name="myItemId" value="External Libraries" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ExternalLibrariesNode" />
-            </PATH_ELEMENT>
-          </PATH>
-          <PATH>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="jabaws-dev" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="jabaws-dev" />
+              <option name="myItemId" value="jabaws" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
           </PATH>
@@ -215,23 +353,11 @@
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
             </PATH_ELEMENT>
             <PATH_ELEMENT>
-              <option name="myItemId" value="jabaws-dev" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="webservices" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="compbio" />
+              <option name="myItemId" value="jabaws" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
             <PATH_ELEMENT>
-              <option name="myItemId" value="ws" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="server" />
+              <option name="myItemId" value="website" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
           </PATH>
@@ -241,76 +367,34 @@
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
             </PATH_ELEMENT>
             <PATH_ELEMENT>
-              <option name="myItemId" value="jabaws-dev" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="webservices" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="compbio" />
+              <option name="myItemId" value="jabaws" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
             <PATH_ELEMENT>
-              <option name="myItemId" value="ws" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-          </PATH>
-          <PATH>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="jabaws-dev" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="jabaws-dev" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="webservices" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="compbio" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-          </PATH>
-          <PATH>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="jabaws-dev" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="jabaws-dev" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="engine" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="engine" />
+              <option name="myItemId" value="conf" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
           </PATH>
         </subPane>
       </pane>
+      <pane id="Scratches" />
+      <pane id="Scope" />
     </panes>
   </component>
   <component name="PropertiesComponent">
     <property name="project.structure.last.edited" value="Modules" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth0" value="214" />
-    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth1" value="233" />
     <property name="project.structure.proportion" value="0.15" />
+    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth1" value="233" />
     <property name="options.splitter.main.proportions" value="0.3" />
-    <property name="FileHistory.git4idea.history.GitHistoryProvider_treeWidth0" value="214" />
-    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatOrder1" value="1" />
     <property name="MemberChooser.sorted" value="false" />
+    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatOrder1" value="1" />
+    <property name="FileHistory.git4idea.history.GitHistoryProvider_treeWidth0" value="214" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_flatOrder0" value="0" />
-    <property name="last_opened_file_path" value="$PROJECT_DIR$/../../jaba-git2/jabaws-dev" />
+    <property name="last_opened_file_path" value="$PROJECT_DIR$/../../jaba-git2" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth2" value="240" />
-    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth3" value="1138" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_treeWidth3" value="1138" />
+    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth3" value="1138" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_treeWidth2" value="240" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_treeWidth1" value="233" />
     <property name="GoToClass.toSaveIncludeLibraries" value="false" />
@@ -329,38 +413,156 @@
     <property name="project.structure.side.proportion" value="0.2" />
     <property name="MemberChooser.copyJavadoc" value="false" />
     <property name="options.searchVisible" value="true" />
+    <property name="aspect.path.notification.shown" value="true" />
+    <property name="nodejs_interpreter_path" value="/usr/local/bin/node" />
+    <property name="js.eslint.eslintPackage" value="" />
+    <property name="js-jscs-nodeInterpreter" value="/usr/local/bin/node" />
+    <property name="settings.editor.selected.configurable" value="web.server" />
+  </component>
+  <component name="RecentsManager">
+    <key name="MoveFile.RECENT_KEYS">
+      <recent name="$PROJECT_DIR$/website/man_pages_old" />
+      <recent name="$PROJECT_DIR$/website" />
+    </key>
+    <key name="CopyFile.RECENT_KEYS">
+      <recent name="$PROJECT_DIR$/website" />
+      <recent name="$PROJECT_DIR$/website/static/css" />
+      <recent name="$PROJECT_DIR$/website/static/img" />
+    </key>
+  </component>
+  <component name="RunDashboard">
+    <option name="ruleStates">
+      <list>
+        <RuleState>
+          <option name="name" value="ConfigurationTypeDashboardGroupingRule" />
+        </RuleState>
+        <RuleState>
+          <option name="name" value="StatusDashboardGroupingRule" />
+        </RuleState>
+      </list>
+    </option>
   </component>
   <component name="RunManager">
     <configuration default="true" type="#org.jetbrains.idea.devkit.run.PluginConfigurationType" factoryName="Plugin">
       <module name="" />
       <option name="VM_PARAMETERS" value="-Xmx512m -Xms256m -XX:MaxPermSize=250m" />
       <option name="PROGRAM_PARAMETERS" />
+      <predefined_log_file id="idea.log" enabled="true" />
       <method />
     </configuration>
-    <configuration default="true" type="Remote" factoryName="Remote">
-      <option name="USE_SOCKET_TRANSPORT" value="true" />
-      <option name="SERVER_MODE" value="false" />
-      <option name="SHMEM_ADDRESS" value="javadebug" />
-      <option name="HOST" value="localhost" />
-      <option name="PORT" value="5005" />
+    <configuration default="true" type="AndroidRunConfigurationType" factoryName="Android App">
+      <module name="" />
+      <option name="DEPLOY" value="true" />
+      <option name="ARTIFACT_NAME" value="" />
+      <option name="PM_INSTALL_OPTIONS" value="" />
+      <option name="ACTIVITY_EXTRA_FLAGS" value="" />
+      <option name="MODE" value="default_activity" />
+      <option name="TARGET_SELECTION_MODE" value="SHOW_DIALOG" />
+      <option name="PREFERRED_AVD" value="" />
+      <option name="CLEAR_LOGCAT" value="false" />
+      <option name="SHOW_LOGCAT_AUTOMATICALLY" value="false" />
+      <option name="SKIP_NOOP_APK_INSTALLATIONS" value="true" />
+      <option name="FORCE_STOP_RUNNING_APP" value="true" />
+      <option name="DEBUGGER_TYPE" value="Java" />
+      <option name="USE_LAST_SELECTED_DEVICE" value="false" />
+      <option name="PREFERRED_AVD" value="" />
+      <Java />
+      <Profilers>
+        <option name="ENABLE_ADVANCED_PROFILING" value="true" />
+        <option name="GAPID_ENABLED" value="false" />
+        <option name="GAPID_DISABLE_PCS" value="false" />
+        <option name="SUPPORT_LIB_ENABLED" value="true" />
+        <option name="INSTRUMENTATION_ENABLED" value="true" />
+      </Profilers>
+      <option name="DEEP_LINK" value="" />
+      <option name="ACTIVITY_CLASS" value="" />
       <method />
     </configuration>
-    <configuration default="true" type="Applet" factoryName="Applet">
+    <configuration default="true" type="AndroidTestRunConfigurationType" factoryName="Android Tests">
       <module name="" />
-      <option name="MAIN_CLASS_NAME" />
-      <option name="HTML_FILE_NAME" />
+      <option name="TESTING_TYPE" value="0" />
+      <option name="INSTRUMENTATION_RUNNER_CLASS" value="" />
+      <option name="METHOD_NAME" value="" />
+      <option name="CLASS_NAME" value="" />
+      <option name="PACKAGE_NAME" value="" />
+      <option name="EXTRA_OPTIONS" value="" />
+      <option name="TARGET_SELECTION_MODE" value="SHOW_DIALOG" />
+      <option name="PREFERRED_AVD" value="" />
+      <option name="CLEAR_LOGCAT" value="false" />
+      <option name="SHOW_LOGCAT_AUTOMATICALLY" value="false" />
+      <option name="SKIP_NOOP_APK_INSTALLATIONS" value="true" />
+      <option name="FORCE_STOP_RUNNING_APP" value="true" />
+      <option name="DEBUGGER_TYPE" value="Java" />
+      <option name="USE_LAST_SELECTED_DEVICE" value="false" />
+      <option name="PREFERRED_AVD" value="" />
+      <Java />
+      <Profilers>
+        <option name="ENABLE_ADVANCED_PROFILING" value="true" />
+        <option name="GAPID_ENABLED" value="false" />
+        <option name="GAPID_DISABLE_PCS" value="false" />
+        <option name="SUPPORT_LIB_ENABLED" value="true" />
+        <option name="INSTRUMENTATION_ENABLED" value="true" />
+      </Profilers>
+      <method />
+    </configuration>
+    <configuration default="true" type="Applet" factoryName="Applet">
+      <module />
       <option name="HTML_USED" value="false" />
       <option name="WIDTH" value="400" />
       <option name="HEIGHT" value="300" />
       <option name="POLICY_FILE" value="$APPLICATION_HOME_DIR$/bin/appletviewer.policy" />
+      <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
+      <method />
+    </configuration>
+    <configuration default="true" type="Application" factoryName="Application">
+      <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
+      <option name="MAIN_CLASS_NAME" />
       <option name="VM_PARAMETERS" />
+      <option name="PROGRAM_PARAMETERS" />
+      <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
       <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
       <option name="ALTERNATIVE_JRE_PATH" />
+      <option name="ENABLE_SWING_INSPECTOR" value="false" />
+      <option name="ENV_VARIABLES" />
+      <option name="PASS_PARENT_ENVS" value="true" />
+      <module name="" />
+      <envs />
       <method />
     </configuration>
-    <configuration default="true" type="TestNG" factoryName="TestNG">
+    <configuration default="true" type="ArquillianJUnit" factoryName="" nameIsGenerated="true">
+      <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
+      <module name="" />
+      <option name="arquillianRunConfiguration">
+        <value>
+          <option name="containerStateName" value="" />
+        </value>
+      </option>
+      <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
+      <option name="ALTERNATIVE_JRE_PATH" />
+      <option name="PACKAGE_NAME" />
+      <option name="MAIN_CLASS_NAME" />
+      <option name="METHOD_NAME" />
+      <option name="TEST_OBJECT" value="class" />
+      <option name="VM_PARAMETERS" />
+      <option name="PARAMETERS" />
+      <option name="WORKING_DIRECTORY" />
+      <option name="ENV_VARIABLES" />
+      <option name="PASS_PARENT_ENVS" value="true" />
+      <option name="TEST_SEARCH_SCOPE">
+        <value defaultName="singleModule" />
+      </option>
+      <envs />
+      <patterns />
+      <method />
+    </configuration>
+    <configuration default="true" type="ArquillianTestNG" factoryName="">
       <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
       <module name="" />
+      <option name="arquillianRunConfiguration">
+        <value>
+          <option name="containerStateName" value="" />
+        </value>
+      </option>
       <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
       <option name="ALTERNATIVE_JRE_PATH" />
       <option name="SUITE_NAME" />
@@ -369,15 +571,15 @@
       <option name="METHOD_NAME" />
       <option name="GROUP_NAME" />
       <option name="TEST_OBJECT" value="CLASS" />
-      <option name="VM_PARAMETERS" value="-ea" />
+      <option name="VM_PARAMETERS" />
       <option name="PARAMETERS" />
-      <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+      <option name="WORKING_DIRECTORY" />
       <option name="OUTPUT_DIRECTORY" />
       <option name="ANNOTATION_TYPE" />
       <option name="ENV_VARIABLES" />
       <option name="PASS_PARENT_ENVS" value="true" />
       <option name="TEST_SEARCH_SCOPE">
-        <value defaultName="moduleWithDependencies" />
+        <value defaultName="singleModule" />
       </option>
       <option name="USE_DEFAULT_REPORTERS" value="false" />
       <option name="PROPERTIES_FILE" />
@@ -386,12 +588,30 @@
       <listeners />
       <method />
     </configuration>
-    <configuration default="true" type="Application" factoryName="Application">
+    <configuration default="true" type="BashConfigurationType" factoryName="Bash">
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="INTERPRETER_PATH" value="/bin/bash" />
+      <option name="WORKING_DIRECTORY" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <option name="SCRIPT_NAME" value="" />
+      <option name="PARAMETERS" value="" />
+      <module name="" />
+      <envs />
+      <method />
+    </configuration>
+    <configuration default="true" type="Cold Fusion runner description" factoryName="Cold Fusion" custom_browser="" web_path="">
+      <method />
+    </configuration>
+    <configuration default="true" type="CucumberJavaRunConfigurationType" factoryName="Cucumber java">
       <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
+      <option name="myFilePath" />
+      <option name="GLUE" />
+      <option name="myNameFilter" />
+      <option name="myGeneratedName" />
       <option name="MAIN_CLASS_NAME" />
       <option name="VM_PARAMETERS" />
       <option name="PROGRAM_PARAMETERS" />
-      <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+      <option name="WORKING_DIRECTORY" />
       <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
       <option name="ALTERNATIVE_JRE_PATH" />
       <option name="ENABLE_SWING_INSPECTOR" value="false" />
@@ -401,6 +621,80 @@
       <envs />
       <method />
     </configuration>
+    <configuration default="true" type="FlashRunConfigurationType" factoryName="Flash App">
+      <option name="BCName" value="" />
+      <option name="IOSSimulatorSdkPath" value="" />
+      <option name="adlOptions" value="" />
+      <option name="airProgramParameters" value="" />
+      <option name="appDescriptorForEmulator" value="Android" />
+      <option name="debugTransport" value="USB" />
+      <option name="debuggerSdkRaw" value="BC SDK" />
+      <option name="emulator" value="NexusOne" />
+      <option name="emulatorAdlOptions" value="" />
+      <option name="fastPackaging" value="true" />
+      <option name="fullScreenHeight" value="0" />
+      <option name="fullScreenWidth" value="0" />
+      <option name="launchUrl" value="false" />
+      <option name="launcherParameters">
+        <LauncherParameters>
+          <option name="browser" value="a7bb68e0-33c0-4d6f-a81a-aac1fdb870c8" />
+          <option name="launcherType" value="OSDefault" />
+          <option name="newPlayerInstance" value="false" />
+          <option name="playerPath" value="/Applications/Flash Player Debugger.app" />
+        </LauncherParameters>
+      </option>
+      <option name="mobileRunTarget" value="Emulator" />
+      <option name="moduleName" value="" />
+      <option name="overriddenMainClass" value="" />
+      <option name="overriddenOutputFileName" value="" />
+      <option name="overrideMainClass" value="false" />
+      <option name="runTrusted" value="true" />
+      <option name="screenDpi" value="0" />
+      <option name="screenHeight" value="0" />
+      <option name="screenWidth" value="0" />
+      <option name="url" value="http://" />
+      <option name="usbDebugPort" value="7936" />
+      <method />
+    </configuration>
+    <configuration default="true" type="FlexUnitRunConfigurationType" factoryName="FlexUnit" appDescriptorForEmulator="Android" class_name="" emulatorAdlOptions="" method_name="" package_name="" scope="Class">
+      <option name="BCName" value="" />
+      <option name="launcherParameters">
+        <LauncherParameters>
+          <option name="browser" value="a7bb68e0-33c0-4d6f-a81a-aac1fdb870c8" />
+          <option name="launcherType" value="OSDefault" />
+          <option name="newPlayerInstance" value="false" />
+          <option name="playerPath" value="/Applications/Flash Player Debugger.app" />
+        </LauncherParameters>
+      </option>
+      <option name="moduleName" value="" />
+      <option name="trusted" value="true" />
+      <method />
+    </configuration>
+    <configuration default="true" type="GradleRunConfiguration" factoryName="Gradle">
+      <ExternalSystemSettings>
+        <option name="executionName" />
+        <option name="externalProjectPath" />
+        <option name="externalSystemIdString" value="GRADLE" />
+        <option name="scriptParameters" />
+        <option name="taskDescriptions">
+          <list />
+        </option>
+        <option name="taskNames">
+          <list />
+        </option>
+        <option name="vmOptions" />
+      </ExternalSystemSettings>
+      <method />
+    </configuration>
+    <configuration default="true" type="GrailsRunConfigurationType" factoryName="Grails">
+      <setting name="vmparams" value="" />
+      <setting name="cmdLine" value="run-app" />
+      <setting name="passParentEnv" value="true" />
+      <setting name="launchBrowser" value="true" />
+      <setting name="launchBrowserUrl" value="" />
+      <setting name="depsClasspath" value="false" />
+      <method />
+    </configuration>
     <configuration default="true" type="JUnit" factoryName="JUnit">
       <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
       <module name="" />
@@ -422,13 +716,150 @@
       <patterns />
       <method />
     </configuration>
-    <list size="0" />
+    <configuration default="true" type="JarApplication" factoryName="JAR Application">
+      <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
+      <envs />
+      <method />
+    </configuration>
+    <configuration default="true" type="Java Scratch" factoryName="Java Scratch">
+      <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
+      <option name="SCRATCH_FILE_ID" value="0" />
+      <option name="MAIN_CLASS_NAME" />
+      <option name="VM_PARAMETERS" />
+      <option name="PROGRAM_PARAMETERS" />
+      <option name="WORKING_DIRECTORY" />
+      <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
+      <option name="ALTERNATIVE_JRE_PATH" />
+      <option name="ENABLE_SWING_INSPECTOR" value="false" />
+      <option name="ENV_VARIABLES" />
+      <option name="PASS_PARENT_ENVS" value="true" />
+      <module name="" />
+      <envs />
+      <method />
+    </configuration>
+    <configuration default="true" type="JavaScriptTestRunnerJest" factoryName="Jest">
+      <node-interpreter value="project" />
+      <working-dir value="" />
+      <envs />
+      <scope-kind value="ALL" />
+      <method />
+    </configuration>
+    <configuration default="true" type="JavaScriptTestRunnerProtractor" factoryName="Protractor">
+      <config-file value="" />
+      <node-interpreter value="project" />
+      <envs />
+      <method />
+    </configuration>
+    <configuration default="true" type="JavascriptDebugType" factoryName="JavaScript Debug">
+      <method />
+    </configuration>
+    <configuration default="true" type="JetRunConfigurationType" factoryName="Kotlin">
+      <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
+      <option name="MAIN_CLASS_NAME" />
+      <option name="VM_PARAMETERS" />
+      <option name="PROGRAM_PARAMETERS" />
+      <option name="WORKING_DIRECTORY" />
+      <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
+      <option name="ALTERNATIVE_JRE_PATH" />
+      <option name="PASS_PARENT_ENVS" value="true" />
+      <module name="jabaws-dev" />
+      <envs />
+      <method />
+    </configuration>
+    <configuration default="true" type="KotlinStandaloneScriptRunConfigurationType" factoryName="Kotlin script">
+      <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
+      <option name="filePath" />
+      <option name="vmParameters" />
+      <option name="alternativeJrePath" />
+      <option name="programParameters" />
+      <option name="passParentEnvs" value="true" />
+      <option name="workingDirectory" />
+      <option name="isAlternativeJrePathEnabled" value="false" />
+      <envs />
+      <method />
+    </configuration>
+    <configuration default="true" type="Remote" factoryName="Remote">
+      <option name="USE_SOCKET_TRANSPORT" value="true" />
+      <option name="SERVER_MODE" value="false" />
+      <option name="SHMEM_ADDRESS" value="javadebug" />
+      <option name="HOST" value="localhost" />
+      <option name="PORT" value="5005" />
+      <method />
+    </configuration>
+    <configuration default="true" type="SpringBootApplicationConfigurationType" factoryName="Spring Boot">
+      <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
+      <module name="" />
+      <envs />
+      <method />
+    </configuration>
+    <configuration default="true" type="TestNG" factoryName="TestNG">
+      <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
+      <module name="" />
+      <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
+      <option name="ALTERNATIVE_JRE_PATH" />
+      <option name="SUITE_NAME" />
+      <option name="PACKAGE_NAME" />
+      <option name="MAIN_CLASS_NAME" />
+      <option name="METHOD_NAME" />
+      <option name="GROUP_NAME" />
+      <option name="TEST_OBJECT" value="CLASS" />
+      <option name="VM_PARAMETERS" value="-ea" />
+      <option name="PARAMETERS" />
+      <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+      <option name="OUTPUT_DIRECTORY" />
+      <option name="ANNOTATION_TYPE" />
+      <option name="ENV_VARIABLES" />
+      <option name="PASS_PARENT_ENVS" value="true" />
+      <option name="TEST_SEARCH_SCOPE">
+        <value defaultName="moduleWithDependencies" />
+      </option>
+      <option name="USE_DEFAULT_REPORTERS" value="false" />
+      <option name="PROPERTIES_FILE" />
+      <envs />
+      <properties />
+      <listeners />
+      <method />
+    </configuration>
+    <configuration default="true" type="js.build_tools.gulp" factoryName="Gulp.js">
+      <node-interpreter>project</node-interpreter>
+      <node-options />
+      <gulpfile />
+      <tasks />
+      <arguments />
+      <envs />
+      <method />
+    </configuration>
+    <configuration default="true" type="js.build_tools.npm" factoryName="npm">
+      <command value="run" />
+      <scripts />
+      <node-interpreter value="project" />
+      <envs />
+      <method />
+    </configuration>
+    <configuration default="true" type="osgi.bnd.run" factoryName="Run Launcher">
+      <method />
+    </configuration>
+    <configuration default="true" type="osgi.bnd.run" factoryName="Test Launcher (JUnit)">
+      <method />
+    </configuration>
     <configuration name="&lt;template&gt;" type="WebApp" default="true" selected="false">
       <Host>localhost</Host>
       <Port>5050</Port>
     </configuration>
   </component>
-  <component name="ShelveChangesManager" show_recycled="false" />
+  <component name="SbtLocalSettings">
+    <option name="externalProjectsViewState">
+      <projects_view />
+    </option>
+  </component>
+  <component name="ShelveChangesManager" show_recycled="false">
+    <option name="remove_strategy" value="false" />
+  </component>
+  <component name="SliceManager">
+    <option name="analysisUIOptions">
+      <AnalysisUIOptions />
+    </option>
+  </component>
   <component name="SvnConfiguration" maxAnnotateRevisions="500" myUseAcceleration="nothing" myAutoUpdateAfterCommit="false" cleanupOnStartRun="false">
     <option name="USER" value="" />
     <option name="PASSWORD" value="" />
@@ -451,10 +882,45 @@
     <task active="true" id="Default" summary="Default task">
       <changelist id="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" name="Default" comment="" />
       <created>1364568968761</created>
+      <option name="number" value="Default" />
+      <option name="presentableId" value="Default" />
       <updated>1364568968761</updated>
+      <workItem from="1487073903492" duration="2131000" />
+      <workItem from="1487156250327" duration="3084000" />
+      <workItem from="1487339552719" duration="2599000" />
+      <workItem from="1488276353545" duration="2713000" />
+      <workItem from="1488279346815" duration="15724000" />
+      <workItem from="1488366210994" duration="3395000" />
+      <workItem from="1488379246606" duration="1813000" />
+      <workItem from="1488465570952" duration="1210000" />
+      <workItem from="1488793686482" duration="4738000" />
+      <workItem from="1488993581303" duration="2096000" />
+      <workItem from="1489054273480" duration="14478000" />
+      <workItem from="1489083059587" duration="197000" />
+      <workItem from="1489140248528" duration="5292000" />
+      <workItem from="1489399347089" duration="8523000" />
+      <workItem from="1489487518570" duration="568000" />
+      <workItem from="1489576926071" duration="308000" />
+      <workItem from="1490604978271" duration="567000" />
+      <workItem from="1491214270330" duration="475000" />
+      <workItem from="1491295038045" duration="3347000" />
+      <workItem from="1491304154631" duration="589000" />
+      <workItem from="1491395781492" duration="12000" />
+      <workItem from="1491395838802" duration="22000" />
+      <workItem from="1491396051400" duration="60000" />
+      <workItem from="1491396130484" duration="17581000" />
+      <workItem from="1491419018389" duration="234000" />
+      <workItem from="1491422575753" duration="2626000" />
+      <workItem from="1491468765003" duration="11402000" />
+      <workItem from="1491554212248" duration="1423000" />
+      <workItem from="1491814142568" duration="6739000" />
+      <workItem from="1491900607240" duration="2564000" />
     </task>
     <servers />
   </component>
+  <component name="TimeTrackingManager">
+    <option name="totallyTimeSpent" value="129320000" />
+  </component>
   <component name="TodoView" selected-index="0">
     <todo-panel id="selected-file">
       <are-packages-shown value="false" />
@@ -476,185 +942,521 @@
     </todo-panel>
   </component>
   <component name="ToolWindowManager">
-    <frame x="1946" y="0" width="1920" height="1152" extended-state="0" />
-    <editor active="false" />
+    <frame x="1439" y="23" width="1920" height="1140" extended-state="6" />
+    <editor active="true" />
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+    </entry>
+    <entry file="file://$PROJECT_DIR$/website/statpages/StatisticsTable.jsp">
+      <provider selected="true" editor-type-id="text-editor">
+        <state relative-caret-position="-111">
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     </entry>
-    <entry file="file://$PROJECT_DIR$/datamodel/compbio/metadata/LimitsManager.java">
+    <entry file="file://$PROJECT_DIR$/website/statpages/ServicesStatus.jsp">
       <provider selected="true" editor-type-id="text-editor">
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     </entry>
-    <entry file="file://$PROJECT_DIR$/datamodel/compbio/data/sequence/Alignment.java">
+    <entry file="file://$PROJECT_DIR$/website/statpages/Statistics.jsp">
       <provider selected="true" editor-type-id="text-editor">
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     </entry>
-    <entry file="file://$PROJECT_DIR$/datamodel/compbio/data/sequence/Alignment.java">
+    <entry file="file://$PROJECT_DIR$/website/statpages/MonthlySummary.jsp">
       <provider selected="true" editor-type-id="text-editor">
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+    <entry file="file://$PROJECT_DIR$/website/statpages/Joblist.jsp">
       <provider selected="true" editor-type-id="text-editor">
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+    <entry file="file://$PROJECT_DIR$/website/template_footer.jsp">
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+    </entry>
+    <entry file="file://$PROJECT_DIR$/website/template_header.jsp">
+      <provider selected="true" editor-type-id="text-editor">
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+    <entry file="file://$PROJECT_DIR$/website/download.jsp">
       <provider selected="true" editor-type-id="text-editor">
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+    </entry>
+    <entry file="file://$PROJECT_DIR$/conf/Engine.cluster.properties">
+      <provider selected="true" editor-type-id="text-editor">
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           <folding />
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/webservices/compbio/ws/server/RegistryWS.java">
+    <entry file="file://$PROJECT_DIR$/conf/Executable.properties">
       <provider selected="true" editor-type-id="text-editor">
-        <state line="29" column="25" selection-start="1110" selection-end="1110" vertical-scroll-proportion="0.0">
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           <folding />
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/webservices/compbio/stat/servlet/AnnualStat.java">
+    <entry file="file://$PROJECT_DIR$/conf/GA.properties">
       <provider selected="true" editor-type-id="text-editor">
-        <state line="38" column="27" selection-start="1385" selection-end="1385" vertical-scroll-proportion="0.0">
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           <folding />
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/testsrc/compbio/runner/msa/MafftTester.java">
+    <entry file="file://$PROJECT_DIR$/conf/Engine.local.properties">
       <provider selected="true" editor-type-id="text-editor">
-        <state line="20" column="22" selection-start="851" selection-end="851" vertical-scroll-proportion="0.0">
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           <folding />
         </state>
       </provider>
     </entry>
-    <entry file="file://$PROJECT_DIR$/webservices/compbio/ws/server/JronnWS.java">
+    <entry file="file://$PROJECT_DIR$/conf/Executable.properties.dundee">
       <provider selected="true" editor-type-id="text-editor">
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           <folding />
         </state>
       </provider>
@@ -745,7 +1547,17 @@
           </splitter-proportions>
         </settings>
       </state>
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+        <settings>
+          <splitter-proportions>
+            <option name="proportions">
+              <list>
+                <option value="0.27700832" />
+              </list>
+            </option>
+          </splitter-proportions>
+        </settings>
+      </state>
     </states>
   </component>
-</project>
-
+</project>
\ No newline at end of file