X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=README;h=f2ff147e7d81a1cb1d0fa02d1bb916392dc7ee0b;hb=cdeddbec457461332a4c447d6ac1ffbe94437f7e;hp=2f4ddecf7cc776277fb9f1a2cadab8879d20f1a8;hpb=f2250b38d1c2eca07197d56c3842b4eb1917d290;p=jalview.git

diff --git a/README b/README
index 2f4ddec..f2ff147 100755
--- a/README
+++ b/README
@@ -1,15 +1,13 @@
-Jalview Release 2.01
--------------------
+Jalview Readme
+--------------
 
 
-
-This is the complete source for Jalview 2.01. 
-
 The source is available as a tar file and comes complete with the GNU General Public License. 
 
 To build the application you will need a J2SDK 1.4+. 
 
-An Ant build file (build.xml) is provided, you will need to install Apache Ant first. Run ant to build the application, use the target "makeApplet" to make the Applet.
+An Ant build file (build.xml) is provided, you will need to install Apache Ant first. 
+Run ant to view usage which will display a list of useful build targets.
 
 You can also use Borland JBuilder to build Jalview. A JBuilder project file (JalviewX.jpx, JalviewApplet.jpx) for both application and applet is provided.
 
@@ -22,7 +20,15 @@ To run application:
 
 java -Djava.ext.dirs=JALVIEW_HOME/lib -cp JALVIEW_HOME/jalview.jar jalview.bin.Jalview
 
-Replace JALVIEW_HOME with the full path to Jalview Installation Directory. If using Windows, use backslash "\" instead of forward slash "/"
+Replace JALVIEW_HOME with the full path to Jalview Installation Directory.
 
 ##################
 
+
+If you use a proxy server add 
+
+-Dhttp.proxyServer=YOUR.SERVER -Dhttp.proxyPort=YOURPORT
+
+If the proxy server requires authentication, add
+
+-Dhttp.proxyUser=USERNAME -Dhttp.proxyPassword=PASSWORD