X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=THIRDPARTYLIBS;h=296ae17f580cde9a2287403680fba8a2a9c3cbb2;hb=ae1c90ecfad4bd26ade358127a5582fa99f3d2b8;hp=a0b8d941068660811c2411d940119ce2d1a0197b;hpb=e01582523d1b2d3e24cc40f78f721ffcce34c756;p=jalview.git diff --git a/THIRDPARTYLIBS b/THIRDPARTYLIBS index a0b8d94..296ae17 100644 --- a/THIRDPARTYLIBS +++ b/THIRDPARTYLIBS @@ -13,6 +13,8 @@ ext.edu.ucsf.rbvi.strucviz2 includes sources originally developed by Scooter Mor Licensing information for each library is given below: +j8lib: + JGoogleAnalytics_0.3.jar APL 2.0 License - http://code.google.com/p/jgoogleanalytics/ Jmol-14.6.4_2016.10.26.jar GPL/LGPLv2 http://sourceforge.net/projects/jmol/files/ VARNAv3-93.jar GPL licenced software by K�vin Darty, Alain Denise and Yann Ponty. http://varna.lri.fr @@ -38,8 +40,6 @@ miglayout-4.0-swing.jar BSD http://www.migcalendar.com/miglayout/versions/4.0/li min-jaba-client.jar regex.jar saaj.jar -spring-core-3.0.5.RELEASE.jar : Apache License: jdas runtime dependencies retrieved via maven - TODO: JAL-3035 remove if no longer needed ? -spring-web-3.0.5.RELEASE.jar : Apache License: jdas runtime dependencies retrieved via maven - TODO: JAL-3035 remove if no longer needed ? vamsas-client.jar wsdl4j.jar xercesImpl.jar @@ -49,15 +49,21 @@ jfreesvg-2.1.jar : GPL v3 licensed library from the JFree suite: http://www.jfre quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/ -vaqua: v4 (latest stable) by Alan Snyder et al. GPLv2 with Classpathe xception, also includes contributions from Quaqua: ownloaded from http://violetlib.org/vaqua/overview.html +vaqua5-patch: This is a patched version of VAqua v5 (latest stable) by Alan Snyder et al. GPLv3 with Classpath exception, also includes contributions from Quaqua: http://violetlib.org/vaqua/overview.html - see doc/patching-vaqua.txt for patch details, and http://issues.jalview.org/browse/JAL-2988 for details of the bug that the patch addresses. -lib/htsjdk-1.120-SNAPSHOT.jar: (currently not required for 2.10) built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute +lib/htsjdk-2.12.jar: built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute lib/biojava-core-4.1.0.jar LGPLv2.1 - latest license at https://github.com/biojava/biojava/blob/master/LICENSE lib/biojava-ontology-4.1.0.jar LGPLv2.1 - latest license at https://github.com/biojava/biojava/blob/master/LICENSE +Libraries for Test Suite + +utils/classgraph-4.1.6.jar: BSD License - allows recovery of classpath for programmatic construction of a Java command line to launch Jalview + version 4.1.6 downloaded from https://mvnrepository.com/artifact/io.github.classgraph/classgraph/4.1.6 + + Additional dependencies examples/javascript/deployJava.js : http://java.com/js/deployJava.js @@ -65,3 +71,33 @@ examples/javascript/jquery*.js : BSD license examples/javascript/jshashtable-2.1.js : Apache License examples/javascript/facebox-1.3.js : MTI License - http://www.opensource.org/licenses/mit-license.php + +New in j11lib: + +FastInfoset.jar CDDL Version 1.1 - https://javaee.github.io/metro-fi/LICENSE +getdown-core.jar Getdown license - https://github.com/threerings/getdown/blob/master/LICENSE +groovy-*2.5.7.jar Apache License, Version 2.0 - http://www.apache.org/licenses/LICENSE-2.0.html +istack-commons-runtime.jar CDDL Version 1.1 - https://glassfish.java.net/public/CDDL+GPL_1_1.html +javax.activation-api-1.2.0.jar CDDL/GPLv2+CE - https://github.com/javaee/activation/blob/master/LICENSE.txt +javax.annotation-api-1.3.2.jar CDDL + GPLv2 with classpath exception - https://github.com/javaee/javax.annotation/blob/master/LICENSE +javax.jws-api-1.1.jar CDDL + GPLv2 with classpath exception - https://glassfish.dev.java.net/nonav/public/CDDL+GPL.html +javax.servlet-api-4.0.1.jar CDDL + GPLv2 with classpath exception - https://oss.oracle.com/licenses/CDDL+GPL-1.1 +javax.xml.rpc-api-1.1.2.jar CDDL + GPLv2 with classpath exception - https://oss.oracle.com/licenses/CDDL+GPL-1.1 +javax.xml.soap-api.jar CDDL + GPLv2 with classpath exception - https://github.com/javaee/javax.xml.soap/blob/master/LICENSE +jaxb-api-2.3.1.jar CDDL 1.1 + GPL2 w/ CPE - https://oss.oracle.com/licenses/CDDL+GPL-1.1 +jaxb-runtime-2.3.2.jar Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php +jaxws-api.jar CDDL + GPLv2 with classpath exception - https://github.com/javaee/jax-ws-spec/blob/master/LICENSE.md +jersey-client-1.19.4.jar CDDL 1.1 + GPL2 w/ CPE - http://glassfish.java.net/public/CDDL+GPL_1_1.html +jersey-core-1.19.4.jar CDDL 1.1 + GPL2 w/ CPE - http://glassfish.java.net/public/CDDL+GPL_1_1.html +jersey-json-1.19.4.jar CDDL 1.1 + GPL2 w/ CPE - http://glassfish.java.net/public/CDDL+GPL_1_1.html +jsr311-api-1.1.1.jar CDDL License - http://www.opensource.org/licenses/cddl1.php +mimepull-1.9.11.jar Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php +policy-2.7.6.jar Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php +slf4j-api-1.7.26.jar MIT License - https://opensource.org/licenses/mit-license.php +slf4j-log4j12-1.7.26.jar MIT License - https://opensource.org/licenses/mit-license.php +stax-ex-1.8.1.jar Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php +stax2-api-4.2.jar The BSD License - http://www.opensource.org/licenses/bsd-license.php +streambuffer-1.5.7.jar Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php +txw2-2.3.2.jar Eclipse Distribution License - v 1.0 - http://www.eclipse.org/org/documents/edl-v10.php +wsdl4j-1.6.3.jar CPL - http://www.opensource.org/licenses/cpl1.0.txt +