X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=THIRDPARTYLIBS;h=c6c817a4f902965d822a29a832c5bc29a0ead4e6;hb=c75ca41e87495a7d86ebc3c8cbeb56610ac48758;hp=ea44193979599e0366594455768c2eccac04a523;hpb=2273eba5668e5340354da60fed329c6c716cc439;p=jalview.git

diff --git a/THIRDPARTYLIBS b/THIRDPARTYLIBS
index ea44193..c6c817a 100644
--- a/THIRDPARTYLIBS
+++ b/THIRDPARTYLIBS
@@ -10,8 +10,8 @@ ext.edu.ucsf.rbvi.strucviz2 includes sources originally developed by Scooter Mor
 Licencing information for each library is given below:
 
 JGoogleAnalytics_0.3.jar	APL 2.0 License - http://code.google.com/p/jgoogleanalytics/
-Jmol-12.1.13.jar	GPL/LGPLv2 http://sourceforge.net/projects/jmol/files/
-VARNAv3-91.jar GPL licenced software by Kévin Darty, Alain Denise and Yann Ponty. http://varna.lri.fr
+Jmol-14.2.14_2015.06.11.jar	GPL/LGPLv2 http://sourceforge.net/projects/jmol/files/
+VARNAv3-93.jar GPL licenced software by K�vin Darty, Alain Denise and Yann Ponty. http://varna.lri.fr
 activation.jar	
 apache-mime4j-0.6.jar
 axis.jar
@@ -20,6 +20,7 @@ commons-codec-1.3.jar
 commons-discovery.jar
 commons-logging-1.1.1.jar
 commons-logging.jar
+commons-net-3.3.jar
 httpclient-4.0.3.jar
 httpcore-4.0.1.jar
 httpmime-4.0.3.jar
@@ -42,6 +43,11 @@ xml-apis.jar
 json_simple-1.1.jar : Apache 2.0 license : downloaded from https://code.google.com/p/json-simple/downloads/list (will move to 1.1.1 version when jalview is mavenised and osgi-ised)
 jfreesvg-2.1.jar : GPL v3 licensed library from the JFree suite: http://www.jfree.org/jfreesvg/
 
+quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/ 
+
+lib/htsjdk-1.120-SNAPSHOT.jar: built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute
+
+
 Additional dependencies
 
 examples/javascript/deployJava.js : http://java.com/js/deployJava.js