X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=THIRDPARTYLIBS;h=caaa7f94e0e0fc153fcda078912de13a7b87aae7;hb=refs%2Fheads%2Ffeatures%2FJAL-1812_JAL-2083_groovyBinding;hp=386541ed23d8d47af01025ab93a5fc08339ab0ea;hpb=274eb184c92307edde158510463c335a5179a724;p=jalview.git

diff --git a/THIRDPARTYLIBS b/THIRDPARTYLIBS
index 386541e..caaa7f9 100644
--- a/THIRDPARTYLIBS
+++ b/THIRDPARTYLIBS
@@ -10,7 +10,8 @@ ext.edu.ucsf.rbvi.strucviz2 includes sources originally developed by Scooter Mor
 Licencing information for each library is given below:
 
 JGoogleAnalytics_0.3.jar	APL 2.0 License - http://code.google.com/p/jgoogleanalytics/
-Jmol-12.1.13.jar	GPL/LGPLv2 http://sourceforge.net/projects/jmol/files/
+Jmol-14.2.14_2015.06.11.jar	GPL/LGPLv2 http://sourceforge.net/projects/jmol/files/
+VARNAv3-93.jar GPL licenced software by K�vin Darty, Alain Denise and Yann Ponty. http://varna.lri.fr
 activation.jar	
 apache-mime4j-0.6.jar
 axis.jar
@@ -19,6 +20,8 @@ commons-codec-1.3.jar
 commons-discovery.jar
 commons-logging-1.1.1.jar
 commons-logging.jar
+commons-net-3.3.jar
+groovy-all-2.4.6-indy.jar	APL 2.0 License - downloaded and extracted from https://dl.bintray.com/groovy/maven/apache-groovy-binary-2.4.6.zip
 httpclient-4.0.3.jar
 httpcore-4.0.1.jar
 httpmime-4.0.3.jar
@@ -39,6 +42,12 @@ wsdl4j.jar
 xercesImpl.jar
 xml-apis.jar
 json_simple-1.1.jar : Apache 2.0 license : downloaded from https://code.google.com/p/json-simple/downloads/list (will move to 1.1.1 version when jalview is mavenised and osgi-ised)
+jfreesvg-2.1.jar : GPL v3 licensed library from the JFree suite: http://www.jfree.org/jfreesvg/
+
+quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/ 
+
+lib/htsjdk-1.120-SNAPSHOT.jar: built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute
+
 
 Additional dependencies