X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=TODO.txt;h=1c907cff06397c38ace588f0b5f63f97e0584dc6;hb=70b2b6ad7d60388a11adc9b8a1f59ddc0fc03a31;hp=539954e99eefe02e28c1355528674bb86b08faf0;hpb=1c8cbe10ed2f25b3b36620a13d16e8cb96f6523f;p=jabaws.git

diff --git a/TODO.txt b/TODO.txt
index 539954e..1c907cf 100644
--- a/TODO.txt
+++ b/TODO.txt
@@ -1,3 +1,16 @@
+TODO write some help on the executable.properties within this file! 
+check that after binaries relocation build tasks point to correct locations!
+GET rid of binaries/help directory!
+update binaries
+ + muscle binary version 3.8.31 for win/lin32/lin64 and sources, docs in website/prog_docs
+ - test Muscle on the cluster
+ - test Muscle compilation
+ + probcons up-to-date
+ + clustal up-to-date 
+ - update tcoffee (8.99 latest)
+ - update Mafft (6.857 latest)
++ make sure conf files are optional!
+
 TODO: 
 Registry 1 week
 webservices - 1 week
@@ -49,12 +62,10 @@ Check the WS input and reject it on submission rather then of access with error
 Globprot need a proper reference to bio python and sav_gol binaries -> they should be 
 somehow taken from disembl. 
 
-Add registry service to query services status
-
-Refactor web services checker to enable a programmatic access to its methods.
-Rename it to avoid confusion with jabaws client
++Add registry service to query services status
 
-Finish the client
++Refactor web services checker to enable a programmatic access to its methods.
++Finish the client
 
 Add interface for Jalview annotation 
 Add the method to return Jalview Annotation to SequenceAnnotation IF