X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=binaries%2FlinuxAMD64%2Ffasta34%2Ftest_s.sh;fp=binaries%2FlinuxAMD64%2Ffasta34%2Ftest_s.sh;h=0000000000000000000000000000000000000000;hb=49bd63da0cc2d713024e3bea5d9f637aba4c5125;hp=14cce8b670ba43e474f623f23c9589402a2248e4;hpb=f500c782a6b1aa1bfcc8aae17e466b35fe59624e;p=jabaws.git diff --git a/binaries/linuxAMD64/fasta34/test_s.sh b/binaries/linuxAMD64/fasta34/test_s.sh deleted file mode 100644 index 14cce8b..0000000 --- a/binaries/linuxAMD64/fasta34/test_s.sh +++ /dev/null @@ -1,47 +0,0 @@ -#!/bin/csh -f -echo "" -echo "starting fasta34 - protein" `date` "on" `hostname` -echo `uname -a` -echo "" -fasta34 -q -m 6 -Z 100000 mgstm1.aa:1-100 q > test_m1.ok2.html -fasta34 -S -q -z 11 -O test_m1.ok2_p25 -s P250 mgstm1.aa:100-218 q -echo "done" -echo "starting fastxy34" `date` -fastx34 -m 9 -S -q mgtt2_x.seq q > test_t2.xk2 -fasty34 -S -q mgtt2_x.seq q > test_t2.yk2 -fastx34 -m 9 -S -q -z 2 mgstm1.esq a > test_m1.xk2z2 -fasty34 -S -q -z 2 mgstm1.esq a > test_m1.yk2z2 -echo "done" -echo "starting fastxy34 rev" `date` -fastx34 -m 9 -q -m 5 mgstm1.rev q > test_m1.xk2r -fasty34 -q -m 5 -M 200-300 -z 2 mgstm1.rev q > test_m1.yk2rz2 -fasty34 -q -m 5 -z 11 mgstm1.rev q > test_m1.yk2rz11 -echo "done" -echo "starting ssearch34" `date` -ssearch34 -m 9 -S -z 3 -q mgstm1.aa q > test_m1.ssz3 -ssearch34 -q -M 200-300 -z 2 -Z 100000 -s P250 mgstm1.aa q > test_m1.ss_p25 -echo "done" -echo "starting fasta34 - DNA" `date` -fasta34 -q -z 2 mgstm1.seq %RMB 4 > test_m1.ok4z2 -fasta34 -q mgstm1.rev %RMB 4 > test_m1.ok4r -echo "done" -echo "starting tfasta34" `date` -tfasta34 -q mgstm1.aa %RMB > test_m1.tk2 -echo "done" -echo "starting tfastxy34" `date` -tfastx34 -m 9 -q -i -3 -m 6 mgstm1.aa %p > test_m1.tx2.html -tfasty34 -q -i -3 -N 5000 mgstm1.aa %p > test_m1.ty2 -echo "done" -echo "starting fastf34" `date` -fastf34 -q m1r.aa q > test_mf.ff_s -echo "done" -echo "starting tfastf34" `date` -tfastf34 -q -E 0.0001 m1r.aa %r > test_mf.tf_r -echo "done" -echo "starting fasts34" `date` -fasts34 -q n0.aa q > test_m1.fs_s -echo "done" -echo "starting tfasts34" `date` -tfasts34 -q n0.aa %r > test_m1.ts_r -echo "done" -echo "done" `date`