X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=binaries%2Fsrc%2Fmafft%2Fcore%2Fmulti2hat3s.c;h=f74721878e02098e22b773e89e0ff6914970ca09;hb=063b30bb5e8161134ae764742636ab538e10eea7;hp=9f9101889b042e0ff80c552e050e7751d4fb6eb4;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git

diff --git a/binaries/src/mafft/core/multi2hat3s.c b/binaries/src/mafft/core/multi2hat3s.c
index 9f91018..f747218 100644
--- a/binaries/src/mafft/core/multi2hat3s.c
+++ b/binaries/src/mafft/core/multi2hat3s.c
@@ -188,6 +188,7 @@ static void pairalign( char name[M][B], int nlen[M], char **seq, double *effarr,
 
 	hat3p = fopen( "hat3", "w" );
 	if( !hat3p ) ErrorExit( "Cannot open hat3." );
+	fprintf( stderr, "\n" );
 	for( i=0; i<njob-1; i++ )
 	{
 		for( j=i+1; j<njob; j++ )
@@ -204,7 +205,7 @@ static void pairalign( char name[M][B], int nlen[M], char **seq, double *effarr,
 			}
 
 
-			fprintf( stderr, "adding %d-%d\n", i, j );
+			fprintf( stderr, "adding %d-%d\r", i, j );
 			putlocalhom2( pseq[0], pseq[1], localhomtable[i]+j, 0, 0, (int)pscore, strlen( pseq[0] ) );
 			for( tmpptr=localhomtable[i]+j; tmpptr; tmpptr=tmpptr->next )
 			{
@@ -214,6 +215,7 @@ static void pairalign( char name[M][B], int nlen[M], char **seq, double *effarr,
 			}
 		}
 	}
+	fprintf( stderr, "\n" );
 	fclose( hat3p );
 
 #if DEBUG