X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=binaries%2Fsrc%2Fmafft%2Fextensions%2Fmxscarna_src%2FprobconsRNA%2FMakeGnuPlot.cc;fp=binaries%2Fsrc%2Fmafft%2Fextensions%2Fmxscarna_src%2FprobconsRNA%2FMakeGnuPlot.cc;h=0000000000000000000000000000000000000000;hb=6e0ce943f09b5ac30f3eb8dc0f20bc75114669ce;hp=fe6641a5874470225ab3fb4cd8c446ea42778ce1;hpb=48f0451143441afce738d887b0cde1fb5cdbc02e;p=jabaws.git

diff --git a/binaries/src/mafft/extensions/mxscarna_src/probconsRNA/MakeGnuPlot.cc b/binaries/src/mafft/extensions/mxscarna_src/probconsRNA/MakeGnuPlot.cc
deleted file mode 100644
index fe6641a..0000000
--- a/binaries/src/mafft/extensions/mxscarna_src/probconsRNA/MakeGnuPlot.cc
+++ /dev/null
@@ -1,58 +0,0 @@
-/////////////////////////////////////////////////////////////////
-// MakeGnuPlot.cc
-/////////////////////////////////////////////////////////////////
-
-#include <iostream>
-#include <fstream>
-
-using namespace std;
-
-int main (int argc, char **argv){
-  
-  if (argc == 1 || argc > 3){
-    cerr << "Usage: makegnuplot annotscores [refscores]" << endl;
-    exit (1);
-  }
-
-  ifstream data (argv[1]);
-
-  if (data.fail()){
-    cerr << "ERROR: Could not open file " << argv[1] << endl;
-    exit (1);
-  }
-  
-  int x, ct = 0;
-  while (data >> x) ct++;
-  data.close();
-  
-  ofstream out ("temporary_gnuplot_script");
-  
-  if (out.fail()){
-    cerr << "ERROR: Could not create temporary file." << endl;
-    exit (1);
-  }
-
-  out << "set title \"Column Reliability Scores\"" << endl
-      << "set xlabel \"Alignment Position\"" << endl
-      << "set ylabel \"Column Reliability\"" << endl
-      << "set xr [1:" << ct << "]" << endl
-      << "set term postscript enhanced color" << endl
-      << "set output \"reliability.ps\"" << endl;
-  
-  if (argc == 3){
-    out << "set style fill solid 0.5 noborder" << endl
-	<< "plot \"" << argv[2] << "\" title \"actual\" with boxes lt 2, \\" << endl
-	<< "     \"" << argv[1] << "\" title \"predicted\" with histeps lt 1 lw 3" << endl;
-  }
-  else 
-    out << "plot \"" << argv[1] << "\" title \"predicted\" with histeps lt 1 lw 3" << endl;
-
-  out.close();
-
-  if (system ("gnuplot temporary_gnuplot_script") == -1){
-    cerr << "ERROR: Could not run Gnuplot correctly." << endl;
-    exit (1);
-  }
-  
-  //system ("rm temporary_gnuplot_script");
-}