X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=binaries%2Fsrc%2Fmafft%2Fextensions%2Fmxscarna_src%2Fvienna%2Fparams.h;fp=binaries%2Fsrc%2Fmafft%2Fextensions%2Fmxscarna_src%2Fvienna%2Fparams.h;h=46d6122f4192e20ad492956bfb53274ff29acbec;hb=063b30bb5e8161134ae764742636ab538e10eea7;hp=0000000000000000000000000000000000000000;hpb=6e0ce943f09b5ac30f3eb8dc0f20bc75114669ce;p=jabaws.git diff --git a/binaries/src/mafft/extensions/mxscarna_src/vienna/params.h b/binaries/src/mafft/extensions/mxscarna_src/vienna/params.h new file mode 100644 index 0000000..46d6122 --- /dev/null +++ b/binaries/src/mafft/extensions/mxscarna_src/vienna/params.h @@ -0,0 +1,32 @@ +#include "energy_const.h" +typedef struct { + int id; + int stack[NBPAIRS+1][NBPAIRS+1]; + int hairpin[31]; + int bulge[MAXLOOP+1]; + int internal_loop[MAXLOOP+1]; + int mismatchI[NBPAIRS+1][5][5]; + int mismatchH[NBPAIRS+1][5][5]; + int mismatchM[NBPAIRS+1][5][5]; + int dangle5[NBPAIRS+1][5]; + int dangle3[NBPAIRS+1][5]; + int int11[NBPAIRS+1][NBPAIRS+1][5][5]; + int int21[NBPAIRS+1][NBPAIRS+1][5][5][5]; + int int22[NBPAIRS+1][NBPAIRS+1][5][5][5][5]; + int F_ninio[5]; + double lxc; + int MLbase; + int MLintern[NBPAIRS+1]; + int MLclosing; + int TerminalAU; + int DuplexInit; + int TETRA_ENERGY[200]; + char Tetraloops[1401]; + int Triloop_E[40]; + char Triloops[241]; + double temperature; +} paramT; + +extern paramT *scale_parameters(void); +extern paramT *copy_parameters(void); +extern paramT *set_parameters(paramT *dest);