X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=binaries%2Fsrc%2Fmafft%2Ftest%2Fsample.fftns2;fp=binaries%2Fsrc%2Fmafft%2Ftest%2Fsample.fftns2;h=0000000000000000000000000000000000000000;hb=6e0ce943f09b5ac30f3eb8dc0f20bc75114669ce;hp=14bc8197464416a0eee37fa9f5582b6aceaa80f6;hpb=48f0451143441afce738d887b0cde1fb5cdbc02e;p=jabaws.git diff --git a/binaries/src/mafft/test/sample.fftns2 b/binaries/src/mafft/test/sample.fftns2 deleted file mode 100644 index 14bc819..0000000 --- a/binaries/src/mafft/test/sample.fftns2 +++ /dev/null @@ -1,468 +0,0 @@ -> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] -MN-----------------GTE--GDNFYVP----FS---------------------NK -TGLARSPY----------------------EYPQY-YLAEPWK---------YSALAAYM -FFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSMN-GY -FV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHAIMGVAF -TWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMFVVHF -LVPFVIIFFCYGRLLCTV------------------------------------------ ------------------------------------------------------------- ----------------------KEAAAAQQ----------ESASTQKA------------- -----------------EKEVTRMVVLMVIGFLVCWVPYASVAFYIFTHQGSD---FGATF -MTLPAFFAKSSALYNPVIYILMNKQFRNCMITT----LCCGKNPLGDDE--SGASTSKTE -VSS--------------------------------------------------------- ---------------------------------VS-TSPVSP-A--- -> 2== U22180 1 rat opsin [J.Mol.Neurosci.5(3),207-209'94] -MN-----------------GTE--GPNFYVP----FS---------------------NI -TGVVRSPF----------------------EQPQY-YLAEPWQ---------FSMLAAYM -FLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSLH-GY -FV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAF -TWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHF -TIPMIVIFFCYGQLVFTV------------------------------------------ ------------------------------------------------------------- ----------------------KEAAAQQQ----------ESATTQKA------------- -----------------EKEVTRMVIIMVIFFLICWLPYASVAMYIFTHQGSN---FGPIF -MTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTS----LCCGKNPLGDDE--ASATASKTE ------------------------------------------------------------- ------------------------------------TSQVAP-A--- -> 3== M92038 1 chicken green sensitive cone opsin [PNAS89,5932-5936'9 -MN-----------------GTE--GINFYVP----MS---------------------NK -TGVVRSPF----------------------EYPQY-YLAEPWK---------YRLVCCYI -FFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAWN-GY -FV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHAMMGIAF -TWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMFVIHF -IIPVVVIFFSYGRLICKV------------------------------------------ ------------------------------------------------------------- ----------------------REAAAQQQ----------ESATTQKA------------- -----------------EKEVTRMVILMVLGFMLAWTPYAVVAFWIFTNKGAD---FTATL -MAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITT----ICCGKNPFGDEDVSSTVSQSKTE -VSS--------------------------------------------------------- ---------------------------------VS-SSQVSP-A--- -> 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish -MN-----------------GTE--GKNFYVP----MS---------------------NR -TGLVRSPF----------------------EYPQY-YLAEPWQ---------FKILALYL -FFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAIN-GY -FV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHAFAGIAF -TWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMFVCHF -ILPVAVIFFTYGRLVCTV------------------------------------------ ------------------------------------------------------------- ----------------------KAAAAQQQ----------DSASTQKA------------- -----------------EREVTKMVILMVFGFLIAWTPYATVAAWIFFNKGAD---FSAKF -MAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTT----IFCGKNPLGDDE-SSTVSTSKTE -VSS--------------------------------------------------------- ---------------------------------------VSP-A--- -> 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish -MN-----------------GTE--GNNFYVP----LS---------------------NR -TGLVRSPF----------------------EYPQY-YLAEPWQ---------FKLLAVYM -FFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAIN-GY -FA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHASAGIAF -TWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMFICHF -ILPVTIIFFTYGRLVCTV------------------------------------------ ------------------------------------------------------------- ----------------------KAAAAQQQ----------DSASTQKA------------- -----------------EREVTKMVILMVLGFLVAWTPYATVAAWIFFNKGAA---FSAQF -MAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTT----LFCGKNPLGDEE-SSTVSTSKTE -VSS--------------------------------------------------------- ---------------------------------------VSP-A--- -> 6== L11864 1 Carassius auratus blue cone opsin [Biochemistry32,208- -MK-----------------QVPEFHEDFYIPIPLDIN---------------------NL -S--AYSPF----------------------LVPQD-HLGNQGI---------FMAMSVFM -FFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFFN-RY -FI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHAIAGCIL -PWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLFCFCF -AVPFGTIVFCYGQLLITL------------------------------------------ ------------------------------------------------------------- ----------------------KLAAKAQA----------DSASTQKA------------- -----------------EREVTKMVVVMVLGFLVCWAPYASFSLWIVSHRGEE---FDLRM -ATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-K----MVCGKN-IEEDE--ASTSSQVTQ -VSS--------------------------------------------------------- ---------------------------------------VAPEK--- -> 7== M13299 1 human BCP <>[Science232(4747),193-202'86] -MR-----------------KMS--EEEFYL-----FK---------------------NI -SSV--GPW----------------------DGPQY-HIAPVWA---------FYLQAAFM -GTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASCN-GY -FV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHALTVVLA -TWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCF -IVPLSLICFSYTQLLRAL------------------------------------------ ------------------------------------------------------------- ----------------------KAVAAQQQ----------ESATTQKA------------- -----------------EREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHG---LDLRL -VTIPSFFSKSACIYNPIIYCFMNKQFQACIM-K----MVCGKA-MTDES--DTCSSQKTE -VST--------------------------------------------------------- ---------------------------------VS-STQVGP-N--- -> 8=opsin, greensensitive human (fragment) S07060 ------------------------------------------------------------- ------------------------------------------------------------- ---------------------------------------DLAETVIA-STISIVNQVS-GY -FV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIVGIAF -SWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCC -ITPLSIIVLCYLQVWLAI------------------------------------------ ------------------------------------------------------------- ----------------------RAVAKQQK----------ESESTQKA------------- -----------------EKEVTRMVVVMVLAFC---------------------------- ------------------------------------------------------------- ------------------------------------------------------------- ----------------------------------------------- -> 9== K03494 1 human GCP <>[Science232(4747),193-202'86] -MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYT----NS---------------------NS -T---RGPF----------------------EGPNY-HIAPRWV---------YHLTSVWM -IFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQVY-GY -FV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLAIVGIAF -SWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCC -ITPLSIIVLCYLQVWLAI------------------------------------------ ------------------------------------------------------------- ----------------------RAVAKQQK----------ESESTQKA------------- -----------------EKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGYP---FHPLM -AALPAFFAKSATIYNPVIYVFMNRQFRNCILQL----F-----GKKVDDGSELSSASKTE -VSS--------------------------------------------------------- ---------------------------------V---SSVSP-A--- -> 10== Z68193 1 human Red Opsin <>[] -MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYT----NS---------------------NS -T---RGPF----------------------EGPNY-HIAPRWV---------YHLTSVWM -IFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQVS-GY -FV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIVGIAF -SWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCC -IIPLAIIMLCYLQVWLAI------------------------------------------ ------------------------------------------------------------- ----------------------RAVAKQQK----------ESESTQKA------------- -----------------EKEVTRMVVVMIFAYCVCWGPYTFFACFAAANPGYA---FHPLM -AALPAYFAKSATIYNPVIYVFMNRQFRNCILQL----F-----GKKVDDGSELSSASKTE -VSS--------------------------------------------------------- ---------------------------------V---SSVSP-A--- -> 11== M92036 1 Gecko gecko P521 [PNAS89,6841-6845'92] -MTEAWNVAVFAARRSRDD-DDTTRGSVFTYT----NT---------------------NN -T---RGPF----------------------EGPNY-HIAPRWV---------YNLVSFFM -IIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQIF-GY -FI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLAIIGIVF -SWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLMITCC -FLPLFIIIVCYLQVWMAI------------------------------------------ ------------------------------------------------------------- ----------------------RAVAAQQK----------ESESTQKA------------- -----------------EREVSRMVVVMIVAFCICWGPYASFVSFAAANPGYA---FHPLA -AALPAYFAKSATIYNPVIYVFMNRQFRNCIMQL----F-----GKKVDDGSEASTTSRTE -VSS--------------------------------------------------------- ---------------------------------VS-NSSVAP-A--- -> 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] -MAA-WEAAFAARRRHEE--EDTTRDSVFTYT----NS---------------------NN -T---RGPF----------------------EGPNY-HIAPRWV---------YNLTSVWM -IFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQIS-GY -FI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLAVAGILF -SWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLMVTCC -FFPLAIIILCYLQVWLAI------------------------------------------ ------------------------------------------------------------- ----------------------RAVAAQQK----------ESESTQKA------------- -----------------EKEVSRMVVVMIVAYCFCWGPYTFFACFAAANPGYA---FHPLA -AALPAYFAKSATIYNPIIYVFMNRQFRNCILQL----F-----GKKVDDGSEVST-SRTE -VSS--------------------------------------------------------- ---------------------------------VS-NSSVSP-A--- -> 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] -MS-----------------SNSSQAP----------P---------------------NG -T---PGPF----------------------DGPQWPYQAPQST---------YVGVAVLM -GTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNIN-GF -FV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHAVSGCAF -TWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILSLFVTCF -VLPLSLILFSYTNLLLTL------------------------------------------ ------------------------------------------------------------- ----------------------RAAAAQQK----------EADTTQRA------------- -----------------EREVTRMVIVMVMAFLLCWLPYSTFALVVATHKGII---IQPVL -ASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEM----LCCGYQPQRTGKASPGTPGPHAD -VTA--------------------------------------------------------- ---------------------------------AGLRNKVMP-AHPV -> 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] -MESGNVSSSLFGNVSTALRPEA----RLSA---E------------------------TR -LLGWNVPP----------------------EELR--HIPEHWLTYPEPPESMNYLLGTLY -IFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSFH-QG -YA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIAMIIF -IYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIFFFSF -VCPTTMITYYYSQIVGHVFSH--------------------------------------- ------------------------------------------------------------- ---------------------EKALRDQAKKMNVESLRSNVDKNKETA------------- -----------------EIRIAKAAITICFLFFCSWTPYGVMSLIGAFGDKTL---LTPGA -TMIPACACKMVACIDPFVYAISHPRYRMELQKRCPW-LALNEKAPES----SAVASTSTT -QEP--------------------------------------------------------- -------------------------------------QQTTA-A--- -> 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 -MEYHNVSSVL-GNVSSVLRPDA----RLSA---E------------------------SR -LLGWNVPP----------------------DELR--HIPEHWLIYPEPPESMNYLLGTLY -IFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSFH-QG -YA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIAMIIF -IYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIFFFSF -VCPTTMITYYYSQIVGHVFSH--------------------------------------- ------------------------------------------------------------- ---------------------EKALRDQAKKMNVDSLRSNVDKSKEAA------------- -----------------EIRIAKAAITICFLFFASWTPYGVMSLIGAFGDKTL---LTPGA -TMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPW-LAISEKAPES----RAAISTSTT -QEQ--------------------------------------------------------- -------------------------------------QQTTA-A--- -> 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] -ME------PLCNASEPPLRPEA----R-SSGNGD------------------------LQ -FLGWNVPP----------------------DQIQ--YIPEHWLTQLEPPASMHYMLGVFY -IFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSFH-RG -FAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVIMNII -IWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIFFFSF -VCPTLMILYYYSQIVGHVFSH--------------------------------------- ------------------------------------------------------------- ---------------------EKALREQAKKMNVESLRSNVDKSKETA------------- -----------------EIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSL---LTQGA -TMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPW-LGVNEKSGEI----SSAQSTTTQ -EQ---------------------------------------------------------- -------------------------------------QQTTA-A--- -> 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 -MD------ALCNASEPPLRPEA----RMSSGSDE------------------------LQ -FLGWNVPP----------------------DQIQ--YIPEHWLTQLEPPASMHYMLGVFY -IFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSFH-RG -FA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVIMNII -IWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIFLFSF -VVPTLMILYYYSQIVGHVFNH--------------------------------------- ------------------------------------------------------------- ---------------------EKALREQAKKMNVESLRSNVDKSKETA------------- -----------------EIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSL---LTPGA -TMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPW-LGVNEKSGEA----SSAQSTTTQ -EQT--------------------------------------------------------- -------------------------------------QQTSA-A--- -> 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 [J.Exp.Biol.1 -MT-----------NATGPQMAYYGAASMDFGYPE------------------------GV -SIVDFVRP----------------------EIKP--YVHQHWYNYPPVNPMWHYLLGVIY -LFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCFSGGV -WM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKAVVFALI -SWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIFIFVFDY -FLPAAIIVFSYVFIVKAIFAH--------------------------------------- ------------------------------------------------------------- ---------------------EAAMRAQAKKMNVSTLRS-NEADAQRA------------- -----------------EIRIAKTALVNVSLWFICWTPYALISLKGVMGDTSG---ITPLV -STLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPW-FCVHETETKS-NDDSQSNSTVAQ ------------------------------------------------------------- ----------------------------------------DK-A--- -> 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 [J.Exp.Biol.1 -MA-----------NVTGPQMAFYGSGAATFGYPE------------------------GM -TVADFVPD----------------------RVKH--MVLDHWYNYPPVNPMWHYLLGVVY -LFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCFSGGR -WM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKATFMCGL -AWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNICIFIFDF -FLPASVIVFSYVFIVKAIFAH--------------------------------------- ------------------------------------------------------------- ---------------------EAAMRAQAKKMNVTNLRS-NEAETQRA------------- -----------------EIRIAKTALVNVSLWFICWTPYAAITIQGLLGNAEG---ITPLL -TTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPW-FCVHEKDPND-VEENQSSNTQTQ ------------------------------------------------------------- ----------------------------------------EK-S--- -> 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] -ME-----SFAVAAAQLGPHFA-----PLS-----------------------------NG -SVVDKVTP----------------------DMAH--LISPYWNQFPAMDPIWAKILTAYM -IMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ET -WV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKM-- --------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFVY -YIPLFLICYSYWFIIAAVSAH--------------------------------------- ------------------------------------------------------------- ---------------------EKAMREQAKKMNVKSLRS-SEDAEKSA------------- -----------------EGKLAKVALVTITLWFMAWTPYLVINCMGLFKF-EG---LTPLN -TIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC-CVFGKVDDGK-SSDAQSQATASE -AE---------------------------------------------------------- ----------------------------------------SK-A--- -> 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] -ME-----SFAVAAAQLGPHFA-----PLS-----------------------------NG -SVVDKVTP----------------------DMAH--LISPYWNQFPAMDPIWAKILTAYM -IMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ET -WV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKIAY -IWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFVY -YIPLFLICYSYWFIIAAVSAH--------------------------------------- ------------------------------------------------------------- ---------------------EKAMREQAKKMNVKSLRS-SEDAEKSA------------- -----------------EGKLAKVALVTITLWFMAWTPYLVINCMGLFKF-EG---LTPLN -TIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC-CVFGKVDDGK-SSDAQSQATASE -AE---------------------------------------------------------- ----------------------------------------SK-A--- -> 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' -MD-----SFAAVATQLGPQFA-----APS-----------------------------NG -SVVDKVTP----------------------DMAH--LISPYWDQFPAMDPIWAKILTAYM -IIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ET -WV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKIAY -IWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFVY -YIPLFLICYSYWFIIAAVSAH--------------------------------------- ------------------------------------------------------------- ---------------------EKAMREQAKKMNVKSLRS-SEDADKSA------------- -----------------EGKLAKVALVTISLWFMAWTPYLVINCMGLFKF-EG---LTPLN -TIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC-CVFGKVDDGK-SSEAQSQATTSE -AE---------------------------------------------------------- ----------------------------------------SK-A--- -> 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] -MERSHLPETPFDLAHSGPRFQ-----AQSSG---------------------------NG -SVLDNVLP----------------------DMAH--LVNPYWSRFAPMDPMMSKILGLFT -LAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYY-ET -WV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIMKILF -IWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLITYSLFVY -YTPLFLICYSYWFIIAAVAAH--------------------------------------- ------------------------------------------------------------- ---------------------EKAMREQAKKMNVKSLRS-SEDCDKSA------------- -----------------EGKLAKVALTTISLWFMAWTPYLVICYFGLFKI-DG---LTPLT -TIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPM-CVFGNTDEPKPDAPASDTETTSE -AD---------------------------------------------------------- ----------------------------------------SK-A--- -> 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 -MERSLLPEPPLAMALLGPRFE-----AQTGG---------------------------NR -SVLDNVLP----------------------DMAP--LVNPHWSRFAPMDPTMSKILGLFT -LVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYY-ET -WV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIMKIAF -IWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLITYSLFVY -YTPLFMICYSYWFIIATVAAH--------------------------------------- ------------------------------------------------------------- ---------------------EKAMRDQAKKMNVKSLRS-SEDCDKSA------------- -----------------ENKLAKVALTTISLWFMAWTPYLIICYFGLFKI-DG---LTPLT -TIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPM-CVCGTTDEPKPDAPPSDTETTSE -AE---------------------------------------------------------- ----------------------------------------SK-D--- -> 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] -MI-----------AVSGPSYE-----AFSYGGQARFN---------------------NQ -TVVDKVPP----------------------DMLH--LIDANWYQYPPLNPMWHGILGFVI -GMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCYY-ET -WV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALIRIIA -IWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVCYGIWVY -FVPLFLIIYSYWFIIQAVAAH--------------------------------------- ------------------------------------------------------------- ---------------------EKNMREQAKKMNVASLRS-SENQNTSA------------- -----------------ECKLAKVALMTISLWFMAWTPYLVINFSGIFNL-VK---ISPLF -TIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPS-LAC-AAEPSS-DAVSTTSGTTTV -TDN--------------------------------------------------------- -------------------------------------EK-SN-A--- -> 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] -M-------------ANQLSYS-----SLGWPYQP------------------------NA -SVVDTMPK----------------------EMLY--MIHEHWYAFPPMNPLWYSILGVAM -IILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCFA-ET -WI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKATLLLLF -VWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYGLAVY -FLPLITMIYCYFFIVHAVAEH--------------------------------------- ------------------------------------------------------------- ---------------------EKQLREQAKKMNVASLRANADQQKQSA------------- -----------------ECRLAKVAMMTVGLWFMAWTPYLIISWAGVFSSGTR---LTPLA -TIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPS-LACGSGESGS-DVKSEASATTTM -EEK--------------------------------------------------------- -------------------------------------PKIPE-A--- -> 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] -MVE-----------------------STTLVNQTWWY---------------------NP -TVD----------------------------------IHPHWAKFDPIPDAVYYSVGIFI -GVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAFM-KK -WI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFLMIIF -VWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILCMYFCGF -MLPIIIIAFCYFNIVMSVSNH--------------------------------------- ------------------------------------------------------------- ---------------------EKEMAAMAKRLNAKELR--KAQAGASA------------- -----------------EMKLAKISMVIITQFMLSWSPYAIIALLAQFGPAEW---VTPYA -AELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKECEDANDAEEEVVA -SER--GGESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYPPPQGY -PPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQ-A--- -> 28== X70498 1 Todarodes pacificus rhodopsin [FEBS317(1-2),5-11'93] -MGR-----------------------DLR-DNETWWY---------------------NP -SIV----------------------------------VHPHWREFDQVPDAVYYSLGIFI -GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL-KK -WI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIF -VWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMFILGF -FGPILIIFFCYFNIVMSVSNH--------------------------------------- ------------------------------------------------------------- ---------------------EKEMAAMAKRLNAKELR--KAQAGANA------------- -----------------EMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEW---VTPYA -AQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETEIPA -GESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQGY--PPQGY -PPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQ-A--- -> 29== L21195 1 human serotonin 5-HT7 receptor protein 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] -M-------------------------------------------------PHLLSGFLEV -TASPAPTW------------DAPPDNVSGCGEQIN------------YGRVEKVVIGSIL -TLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGK -WI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS -VWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYSTAVAF -YIPMSVMLFMYYQIYKAAR----------------------------------------- ----------KSAAKHKFPGFPRVQPESVISL----------------------------- ---------------------NGVVKLQKEVEECANLSRLL-------------------- -----KHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWV -ERTCLWLGYANSLINPFIYAFFNRDLRPTSRSL----L---QCQYRNINRKLSAAGMHEA -LKLAERPERSEFVLQNSDHCGKK------------------------------------- -------------------------------------------GHDT -> 31=p A47425 serotonin receptor 5HT-7 - rat -M-------------------------------------------------PHLLSGFLEV -TASPAPTW------------DAPPDNVSGCGEQIN------------YGRVEKVVIGSIL -TLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGK -WI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS -VWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYSTAVAF -YIPMSVMLFMYYQIYKAAR----------------------------------------- ----------KSAAKHKFPGFPRVQPESVISL----------------------------- ---------------------NGVVKLQKEVEECANLSRLL-------------------- -----KHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWV -ERTCLWLGYANSLINPFIYAFFNRDLRTTYRSL----L---QCQYRNINRKLSAAGMHEA -LKLAERPERSEFVLQNSDHCGKK------------------------------------- -------------------------------------------GHDT -> 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] -MDVLSPGQ-----------------GNNTTSPPAPFETGG------------------NT -TGISDVTV------------------------------------------SYQVITSLLL -GTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVL-NK -WT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISL -TWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH----------GYTIYSTFGAF -YIPLLLMLVLYGRIFRAARFRIRK------------------------------------ ----TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR---------NWRL -GVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG--PTPCAPASFER -KNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCH-MPTLL -GAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKI----I-----KCKFCRQ---------- ------------------------------------------------------------- ----------------------------------------------- -> 33=p A35181 serotonin receptor class 1A - rat -MDVFSFGQ-----------------GNNTTASQEPFGTGG------------------NV -TSISDVTF------------------------------------------SYQVITSLLL -GTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVL-NK -WT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISL -TWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH----------GYTIYSTFGAF -YIPLLLMLVLYGRIFRAARFRIRK------------------------------------ ----TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG---------DWRR -CAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG--SNSYAPACLER -KNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCH-MPALL -GAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKI----I-----KCKFCRR---------- ------------------------------------------------------------- ----------------------------------------------- -> 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] -MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------LV -TSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLTSVIL -GLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEIS-KV -WF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMV -VWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFSTVGAF -YLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSDCNGCNS -PDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS----------SERL -KQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS------------- -RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE-G-IPPFA -RSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKI----LFG---KYRRGHR---------- ------------------------------------------------------------- ----------------------------------------------- -> 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail -MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------LV -TSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLTSVIL -GLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEIS-KV -WF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMV -VWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFSTVGAF -YLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSDCNGCNS -PDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS----------SERL -KQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS------------- -RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE-G-IPPFA -RSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKI----LFG---KYRRGHR---------- ------------------------------------------------------------- ----------------------------------------------- -> 36== X95604 1 Bombyx mori serotonin receptor [InsectBiochem.Mol.Bi -MEGAE-GQEELDWEAL--YLRLP--LQNCSWNSTGWEPNW------------------NV -TVVPNTTW---------WQASAPFDTPAALVRAAAK--------------------AVVL -GLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEVV-QR -WT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGMMIAC -VWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIFATASSF -YVPVLIILILYWRIYQTARKRIR------------------------------------- ---------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIAAAVVAVIGRPL -PTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGAVAAAYYPSLVRR -KPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-CDCE---VSPVL -TSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRL----LCGRRVRRRRAPQ---------- ------------------------------------------------------------- -----------------------------------------------