X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=binaries%2Fsrc%2Fmafft%2Ftest%2Fsample.linsi;fp=binaries%2Fsrc%2Fmafft%2Ftest%2Fsample.linsi;h=0000000000000000000000000000000000000000;hb=6e0ce943f09b5ac30f3eb8dc0f20bc75114669ce;hp=252c31fd96f2ea23f1b218501dbe8f5cb6cf01cf;hpb=48f0451143441afce738d887b0cde1fb5cdbc02e;p=jabaws.git diff --git a/binaries/src/mafft/test/sample.linsi b/binaries/src/mafft/test/sample.linsi deleted file mode 100644 index 252c31f..0000000 --- a/binaries/src/mafft/test/sample.linsi +++ /dev/null @@ -1,468 +0,0 @@ -> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] -MN----------------------GTEGDNFYVPFSNKTGLA--RSPYEYPQY------- -------------------YLAEPW-------------------KYSALAAYMFFLILVGF -PVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPT -MCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC --AAPPLV-GWS-----RYIPEGMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIF -FCYGRLLCTVKEAAAAQQESA--------------------------------------- ------------------------------------------------------------- -------------------------------------------STQKAEKEVTRMVVLMVI -GFLVCWVPYASVAFYIFT--HQGSD-FGATFMTLPAFFAKSSALYNPVIYILMNKQFRNC -MITTL-----CCGKNPLGDDESG--AS-TSKTEVS------------------------- ------------------------------------------------------------- --SVS-TSPVSPA--- -> 2== U22180 1 rat opsin [J.Mol.Neurosci.5(3),207-209'94] -MN----------------------GTEGPNFYVPFSNITGVV--RSPFEQPQY------- -------------------YLAEPW-------------------QFSMLAAYMFLLIVLGF -PINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPT -GCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC --AAPPLV-GWS-----RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIF -FCYGQLVFTVKEAAAQQQESA--------------------------------------- ------------------------------------------------------------- -------------------------------------------TTQKAEKEVTRMVIIMVI -FFLICWLPYASVAMYIFT--HQGSN-FGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNC -MLTSL-----CCGKNPLGDDEAS--AT-ASKTETS------------------------- ------------------------------------------------------------- --QVA-PA-------- -> 3== M92038 1 chicken green sensitive cone opsin [PNAS89,5932-5936'9 -MN----------------------GTEGINFYVPMSNKTGVV--RSPFEYPQY------- -------------------YLAEPW-------------------KYRLVCCYIFFLISTGL -PINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPV -GCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC --AAPPLF-GWS-----RYMPEGMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIF -FSYGRLICKVREAAAQQQESA--------------------------------------- ------------------------------------------------------------- -------------------------------------------TTQKAEKEVTRMVILMVL -GFMLAWTPYAVVAFWIFT--NKGAD-FTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNC -MITTI-----CCGKNPFGDEDVSSTVS-QSKTEVS------------------------- ------------------------------------------------------------- --SVS-SSQVSPA--- -> 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish -MN----------------------GTEGKNFYVPMSNRTGLV--RSPFEYPQY------- -------------------YLAEPW-------------------QFKILALYLFFLMSMGL -PINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPT -GCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC --AAPPLF-GWS-----RYIPEGMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIF -FTYGRLVCTVKAAAAQQQDSA--------------------------------------- ------------------------------------------------------------- -------------------------------------------STQKAEREVTKMVILMVF -GFLIAWTPYATVAAWIFF--NKGAD-FSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNC -MLTTI-----FCGKNPLGDDESS-TVS-TSKTEVS------------------------- ------------------------------------------------------------- --SVS-PA-------- -> 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish -MN----------------------GTEGNNFYVPLSNRTGLV--RSPFEYPQY------- -------------------YLAEPW-------------------QFKLLAVYMFFLICLGL -PINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPT -GCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC --AAPPLV-GWS-----RYIPEGIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIF -FTYGRLVCTVKAAAAQQQDSA--------------------------------------- ------------------------------------------------------------- -------------------------------------------STQKAEREVTKMVILMVL -GFLVAWTPYATVAAWIFF--NKGAA-FSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSC -MLTTL-----FCGKNPLGDEESS-TVS-TSKTEVS------------------------- ------------------------------------------------------------- --SVS-PA-------- -> 6== L11864 1 Carassius auratus blue cone opsin [Biochemistry32,208- -MK--------------------QVPEFHEDFYIPIPLDINNLSAYSPFLVPQD------- -------------------HLGNQG-------------------IFMAMSVFMFFIFIGGA -SINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGAT -ACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA --SLPPLF-GWS-----RYIPEGLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIV -FCYGQLLITLKLAAKAQADSA--------------------------------------- ------------------------------------------------------------- -------------------------------------------STQKAEREVTKMVVVMVL -GFLVCWAPYASFSLWIVS--HRGEE-FDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSC -MMKMV------CGKN-IEEDEAS--TS-SQVTQVS------------------------- ------------------------------------------------------------- --SVA-PEK------- -> 7== M13299 1 human BCP <>[Science232(4747),193-202'86] -MR----------------------KMSEEEFYL-----FKNISSVGPWDGPQY------- -------------------HIAPVW-------------------AFYLQAAFMGTVFLIGF -PLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRH -VCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV --SIPPFF-GWS-----RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLIC -FSYTQLLRALKAVAAQQQESA--------------------------------------- ------------------------------------------------------------- -------------------------------------------TTQKAEREVSRMVVVMVG -SFCVCYVPYAAFAMYMVN--NRNHG-LDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQAC -IMKMV------CGKA---MTDESDTCS-SQKTEVS------------------------- ------------------------------------------------------------- --TVS-STQVGPN--- -> 8=opsin, greensensitive human (fragment) S07060 ------------------------------------------------------------- ------------------------------------------------------------- -------------------------------DLAETVIA-STISIVNQVS-GYFV--LGHP -MCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW --TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIV -LCYLQVWLAIRAVAKQQKESE--------------------------------------- ------------------------------------------------------------- -------------------------------------------STQKAEKEVTRMVVVMVL -AFC--------------------------------------------------------- ------------------------------------------------------------- ------------------------------------------------------------- ---------------- -> 9== K03494 1 human GCP <>[Science232(4747),193-202'86] -MAQQWSLQRLAGRHPQDS-YEDSTQ--SSIFTY-----TNSNSTRGPFEGPNY------- -------------------HIAPRW-------------------VYHLTSVWMIFVVIASV -FTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQVY-GYFV--LGHP -MCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW --TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIV -LCYLQVWLAIRAVAKQQKESE--------------------------------------- ------------------------------------------------------------- -------------------------------------------STQKAEKEVTRMVVVMVL -AFCFCWGPYAFFACFAAA--NPGYP-FHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNC -ILQLF----------GKKVDDGSELSS-ASKTEVS------------------------- ------------------------------------------------------------- --SVS---SVSPA--- -> 10== Z68193 1 human Red Opsin <>[] -MAQQWSLQRLAGRHPQDS-YEDSTQ--SSIFTY-----TNSNSTRGPFEGPNY------- -------------------HIAPRW-------------------VYHLTSVWMIFVVTASV -FTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQVS-GYFV--LGHP -MCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW --TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIM -LCYLQVWLAIRAVAKQQKESE--------------------------------------- ------------------------------------------------------------- -------------------------------------------STQKAEKEVTRMVVVMIF -AYCVCWGPYTFFACFAAA--NPGYA-FHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNC -ILQLF----------GKKVDDGSELSS-ASKTEVS------------------------- ------------------------------------------------------------- --SVS---SVSPA--- -> 11== M92036 1 Gecko gecko P521 [PNAS89,6841-6845'92] -MTEAWNVAVFAARRSRDD--DDTTR--GSVFTY-----TNTNNTRGPFEGPNY------- -------------------HIAPRW-------------------VYNLVSFFMIIVVIASC -FTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHP -LCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW --SAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIII -VCYLQVWMAIRAVAAQQKESE--------------------------------------- ------------------------------------------------------------- -------------------------------------------STQKAEREVSRMVVVMIV -AFCICWGPYASFVSFAAA--NPGYA-FHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNC -IMQLF----------GKKVDDGSEAST-TSRTEVS------------------------- ------------------------------------------------------------- --SVS-NSSVAPA--- -> 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] -MA-AWE-AAFAARRRHEE--EDTTR--DSVFTY-----TNSNNTRGPFEGPNY------- -------------------HIAPRW-------------------VYNLTSVWMIFVVAASV -FTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQIS-GYFI--LGHP -MCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW --TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIII -LCYLQVWLAIRAVAAQQKESE--------------------------------------- ------------------------------------------------------------- -------------------------------------------STQKAEKEVSRMVVVMIV -AYCFCWGPYTFFACFAAA--NPGYA-FHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNC -ILQLF----------GKKVDDGSEVST--SRTEVS------------------------- ------------------------------------------------------------- --SVS-NSSVSPA--- -> 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] -MS-------------------------------SNSSQAPPNGTPGPFDGPQWP------ -------------------YQAPQS-------------------TYVGVAVLMGTVVACAS -VVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRR -MCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW --SAPPLL-GWS-----SYVPEGLRTSCGPNWYTGGS--NNNSYILSLFVTCFVLPLSLIL -FSYTNLLLTLRAAAAQQKEAD--------------------------------------- ------------------------------------------------------------- -------------------------------------------TTQRAEREVTRMVIVMVM -AFLLCWLPYSTFALVVAT--HKGII-IQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSC -LLEML-----CCGYQPQRTGKASPGTP-GPHADVT------------------------- ------------------------------------------------------------- --AAGLRNKVMPAHPV -> 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] -MESGNVSSSLFGNVSTALRPEARLSAE----------TRLLGWNVPPEELR--------- -------------------HIPEHWLTYP----------EPPESMNYLLGTLYIFFTLMSM -LGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSFH-QGYA--LGHL -GCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW --VVACYTETWG-----RFVPEGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMIT -YYYSQIVGHVFSHEKALRDQAKKMNVESLR------------------------------ ------------------------------------------------------------- --------------------------------------SNVDKNKETAEIRIAKAAITICF -LFFCSWTPYGVMSLIGAF--GDKTL-LTPGATMIPACACKMVACIDPFVYAISHPRYRME -LQKRCPWL--ALNEKAPESSAVASTST-TQEPQQT------------------------- ------------------------------------------------------------- --TAA----------- -> 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 -MEYHNVSSVL-GNVSSVLRPDARLSAE----------SRLLGWNVPPDELR--------- -------------------HIPEHWLIYP----------EPPESMNYLLGTLYIFFTVISM -IGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSFH-QGYA--LGHL -GCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW --VVACYTESWG-----RFVPEGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMIT -YYYSQIVGHVFSHEKALRDQAKKMNVDSLR------------------------------ ------------------------------------------------------------- --------------------------------------SNVDKSKEAAEIRIAKAAITICF -LFFASWTPYGVMSLIGAF--GDKTL-LTPGATMIPACTCKMVACIDPFVYAISHPRYRME -LQKRCPWL--AISEKAPESRAAISTST-TQEQQQT------------------------- ------------------------------------------------------------- --TAA----------- -> 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] -ME------PLCNASEPPLRPEAR-SSGNGD-------LQFLGWNVPPDQIQ--------- -------------------YIPEHWLTQL----------EPPASMHYMLGVFYIFLFCAST -VGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSFH-RGFAIYLGNT -WCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW --VVLPLTQFWD-----RFVPEGYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMIL -YYYSQIVGHVFSHEKALREQAKKMNVESLR------------------------------ ------------------------------------------------------------- --------------------------------------SNVDKSKETAEIRIAKAAITICF -LFFVSWTPYGVMSLIGAF--GDKSL-LTQGATMIPACTCKLVACIDPFVYAISHPRYRLE -LQKRCPWL--GVNEKSGEISSAQSTTT-QEQQQTT------------------------- ------------------------------------------------------------- --AA------------ -> 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 -MD------ALCNASEPPLRPEARMSSGSDE-------LQFLGWNVPPDQIQ--------- -------------------YIPEHWLTQL----------EPPASMHYMLGVFYIFLFFAST -LGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSFH-RGFA--LGNT -WCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW --VVLPLTQFWD-----RFVPEGYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMIL -YYYSQIVGHVFNHEKALREQAKKMNVESLR------------------------------ ------------------------------------------------------------- --------------------------------------SNVDKSKETAEIRIAKAAITICF -LFFVSWTPYGVMSLIGAF--GDKSL-LTPGATMIPACTCKLVACIEPFVYAISHPRYRME -LQKRCPWL--GVNEKSGEASSAQSTTT-QEQTQQT------------------------- ------------------------------------------------------------- --SAA----------- -> 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 [J.Exp.Biol.1 -M-----------TNATGPQMAYYGAASMDFGYPE---GVSIVDFVRPEIKP--------- -------------------YVHQHWYNYP----------PVNPMWHYLLGVIYLFLGTVSI -FGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQ -YCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC --ALPPFF-GWG-----NYILEGILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIV -FSYVFIVKAIFAHEAAMRAQAKKMNVSTLR------------------------------ ------------------------------------------------------------- --------------------------------------S-NEADAQRAEIRIAKTALVNVS -LWFICWTPYALISLKGVM--GDTSG-ITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLA -ITQHLPWF--CVHETETKSNDDSQSNS-TVAQDKA------------------------- ------------------------------------------------------------- ---------------- -> 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 [J.Exp.Biol.1 -M-----------ANVTGPQMAFYGSGAATFGYPE---GMTVADFVPDRVKH--------- -------------------MVLDHWYNYP----------PVNPMWHYLLGVVYLFLGVISI -AGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGT -YCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW --SLPPFF-GWG-----SYTLEGILDSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIV -FSYVFIVKAIFAHEAAMRAQAKKMNVTNLR------------------------------ ------------------------------------------------------------- --------------------------------------S-NEAETQRAEIRIAKTALVNVS -LWFICWTPYAAITIQGLL--GNAEG-ITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLA -ITQHLPWF--CVHEKDPNDVEENQSSN-TQTQEKS------------------------- ------------------------------------------------------------- ---------------- -> 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] -ME-----SFAVAAAQLGPHFAPLS-------------NGSVVDKVTPDMAH--------- -------------------LISPYWNQFP----------AMDPIWAKILTAYMIMIGMISW -CGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPM -MCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGR-PMTIPLALGKM---------- ------------------YVPEGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLIC -YSYWFIIAAVSAHEKAMREQAKKMNVKSLR------------------------------ ------------------------------------------------------------- --------------------------------------S-SEDAEKSAEGKLAKVALVTIT -LWFMAWTPYLVINCMGLF---KFEG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLA -LKEKCPCC--VFGKVDDGKSSDAQSQA-TASEAESKA----------------------- ------------------------------------------------------------- ---------------- -> 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] -ME-----SFAVAAAQLGPHFAPLS-------------NGSVVDKVTPDMAH--------- -------------------LISPYWNQFP----------AMDPIWAKILTAYMIMIGMISW -CGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPM -MCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW --CLAPAF-GWS-----RYVPEGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLIC -YSYWFIIAAVSAHEKAMREQAKKMNVKSLR------------------------------ ------------------------------------------------------------- --------------------------------------S-SEDAEKSAEGKLAKVALVTIT -LWFMAWTPYLVINCMGLF---KFEG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLA -LKEKCPCC--VFGKVDDGKSSDAQSQA-TASEAESKA----------------------- ------------------------------------------------------------- ---------------- -> 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' -MD-----SFAAVATQLGPQFAAPS-------------NGSVVDKVTPDMAH--------- -------------------LISPYWDQFP----------AMDPIWAKILTAYMIIIGMISW -CGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--LGPM -MCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIW -CCLAPVF-GWS-----RYVPEGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLIC -YSYWFIIAAVSAHEKAMREQAKKMNVKSLR------------------------------ ------------------------------------------------------------- --------------------------------------S-SEDADKSAEGKLAKVALVTIS -LWFMAWTPYLVINCMGLF---KFEG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLA -LKEKCPCC--VFGKVDDGKSSEAQSQA-TTSEAESKA----------------------- ------------------------------------------------------------- ---------------- -> 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] -MERSHLPETPFDLAHSGPRFQAQSSG-----------NGSVLDNVLPDMAH--------- -------------------LVNPYWSRFA----------PMDPMMSKILGLFTLAIMIISC -CGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPL -WCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW --TVMPLI-GWS-----AYVPEGNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLIC -YSYWFIIAAVAAHEKAMREQAKKMNVKSLR------------------------------ ------------------------------------------------------------- --------------------------------------S-SEDCDKSAEGKLAKVALTTIS -LWFMAWTPYLVICYFGLF---KIDG-LTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIV -LKEKCPMC--VFGNTDEPKPDAPASDTETTSEADSKA----------------------- ------------------------------------------------------------- ---------------- -> 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 -MERSLLPEPPLAMALLGPRFEAQTGG-----------NRSVLDNVLPDMAP--------- -------------------LVNPHWSRFA----------PMDPTMSKILGLFTLVILIISC -CGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPL -WCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW --TIMPLI-GWS-----SYVPEGNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMIC -YSYWFIIATVAAHEKAMRDQAKKMNVKSLR------------------------------ ------------------------------------------------------------- --------------------------------------S-SEDCDKSAENKLAKVALTTIS -LWFMAWTPYLIICYFGLF---KIDG-LTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLV -LKEKCPMC--VCGTTDEPKPDAPPSDTETTSEAESKD----------------------- ------------------------------------------------------------- ---------------- -> 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] -M-----------IAVSGPSYEAFSYGGQARFN-----NQTVVDKVPPDMLH--------- -------------------LIDANWYQYP----------PLNPMWHGILGFVIGMLGFVSA -MGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPL -FCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW --TIAPMF-GWN-----RYVPEGNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLII -YSYWFIIQAVAAHEKNMREQAKKMNVASLR------------------------------ ------------------------------------------------------------- --------------------------------------S-SENQNTSAECKLAKVALMTIS -LWFMAWTPYLVINFSGIF---NLVK-ISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAA -LFAKFPSL--ACAA-EPSSDAVSTTSG-TTTVTDNEKSNA-------------------- ------------------------------------------------------------- ---------------- -> 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] -M------ANQLSYSSLGWPYQP---------------NASVVDTMPKEMLY--------- -------------------MIHEHWYAFP----------PMNPLWYSILGVAMIILGIICV -LGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPF -MCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW --TILPFF-GWS-----RYVPEGNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMI -YCYFFIVHAVAEHEKQLREQAKKMNVASLR------------------------------ ------------------------------------------------------------- --------------------------------------ANADQQKQSAECRLAKVAMMTVG -LWFMAWTPYLIISWAGVF--SSGTR-LTPLATIWGSVFAKANSCYNPIVYGISHPRYKAA -LYQRFPSL--ACGSGESGSDVKSEASA-TTTMEEKPKIPEA------------------- ------------------------------------------------------------- ---------------- -> 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] -M-------------------------------VESTTLVNQTWWYNPTV----------- -------------------DIHPHWAKFD----------PIPDAVYYSVGIFIGVVGIIGI -LGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKV -ACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW --SVGPVF-NWG-----AYVPEGILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIA -FCYFNIVMSVSNHEKEMAAMAKRLNAKELR------------------------------ ------------------------------------------------------------- ----------------------------------------KAQAGASAEMKLAKISMVIIT -QFMLSWSPYAIIALLAQF--GPAEW-VTPYAAELPVLFAKASAIHNPIVYSVSHPKFREA -IQTTFPWLLTCCQFDEKECEDANDAEE-EVVASER--GGESRDAAQMKEMMAMMQKMQAQ -QAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAP -QGAPPQGVDNQAYQA -> 28== X70498 1 Todarodes pacificus rhodopsin [FEBS317(1-2),5-11'93] -M--------------------------------GRDLRDNETWWYNPSI----------- -------------------VVHPHWREFD----------QVPDAVYYSLGIFIGICGIIGC -GGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFA -ACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW --AIGPIF-GWG-----AYTLEGVLCNCSFDYISRD--STTRSNILCMFILGFFGPILIIF -FCYFNIVMSVSNHEKEMAAMAKRLNAKELR------------------------------ ------------------------------------------------------------- ----------------------------------------KAQAGANAEMRLAKISIVIVS -QFLLSWSPYAVVALLAQF--GPLEW-VTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREA -ISQTFPWVLTCCQFDDKETEDDKDAET-EIPAGESSDAAPSADAAQMKEMMAMMQKMQQQ -QAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP----- --AAPPQGVDNQAYQA -> 29== L21195 1 human serotonin 5-HT7 receptor protein 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] -M--------------------------------------------PHLLSGFLEVTA--- -------------------SPAPTWDAPPDNVSGCGEQINYGRVEKVVIGSILTLITLLTI -AGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHF -FCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI --TLPPLF-GWA-----QNVNDDKVCLISQDF----------GYTIYSTAVAFYIPMSVML -FMYYQIYKAARKSAAKHKFP--------------GFPRVQPESVISLNGVVKLQKEVEE- ------------------------------------------------------------- ----------------------------CANLSRLLKHERKNISIFKREQKAATTLGIIVG -AFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPT -SRSLL-----QCQYRNINRKLSAAGMH-EALKLAERPERSEFVLQNSDHCGKKGHDT--- ------------------------------------------------------------- ---------------- -> 31=p A47425 serotonin receptor 5HT-7 - rat -M--------------------------------------------PHLLSGFLEVTA--- -------------------SPAPTWDAPPDNVSGCGEQINYGRVEKVVIGSILTLITLLTI -AGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHF -FCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI --TLPPLF-GWA-----QNVNDDKVCLISQDF----------GYTIYSTAVAFYIPMSVML -FMYYQIYKAARKSAAKHKFP--------------GFPRVQPESVISLNGVVKLQKEVEE- ------------------------------------------------------------- ----------------------------CANLSRLLKHERKNISIFKREQKAATTLGIIVG -AFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTT -YRSLL-----QCQYRNINRKLSAAGMH-EALKLAERPERSEFVLQNSDHCGKKGHDT--- ------------------------------------------------------------- ---------------- -> 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] -MDVLSPGQGNNTTSPPAPF----------------------------------------- -------------------ETGGNTTGIS----------DVTVSYQVITSLLLGTLIFCAV -LGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQV -TCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI --SIPPML-GWRTP---EDRSDPDACTISKDH----------GYTIYSTFGAFYIPLLLML -VLYGRIFRAARFRIRKTVKKVEKTGADTRHGASPAPQPKKS---------VNGESGSRNW -RLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAPASFER -KNERNA-------------------------------EAKRKMALARERKTVKTLGIIMG -TFILCWLPFFIVALVLPF-CESSCH-MPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNA -FKKII-----KCKFCRQ------------------------------------------- ------------------------------------------------------------- ---------------- -> 33=p A35181 serotonin receptor class 1A - rat -MDVFSFGQGNNTTASQEPF----------------------------------------- -------------------GTGGNVTSIS----------DVTFSYQVITSLLLGTLIFCAV -LGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQV -TCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI --SIPPML-GWRTP---EDRSDPDACTISKDH----------GYTIYSTFGAFYIPLLLML -VLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSSAPPPKKS---------LNGQPGSGDW -RRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYAPACLER -KNERNA-------------------------------EAKRKMALARERKTVKTLGIIMG -TFILCWLPFFIVALVLPF-CESSCH-MPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNA -FKKII-----KCKFCRR------------------------------------------- ------------------------------------------------------------- ---------------- -> 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] -MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFINGS -HSSRSRDNASANDTSATNMTDDRYWSLT----------VYSHEHLVLTSVILGLFVLCCI -IGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSE -VCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI --SIPPLF-GWRDP--NNDPDKTGTCIISQDK----------GYTIFSTVGAFYLPMLVMM -IIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKK -KRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEE -ASIAMLERQCNNGKKISSNDTPYS-------------RTREKLELKRERKAARTLAIITG -AFLICWLPFFIIALIGPF--VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSA -FQKIL-----FGKYRRGHR----------------------------------------- ------------------------------------------------------------- ---------------- -> 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail -MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFINGS -HSSRSRDNASANDTSATNMTDDRYWSLT----------VYSHEHLVLTSVILGLFVLCCI -IGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSE -VCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI --SIPPLF-GWRDP--NNDPDKTGTCIISQDK----------GYTIFSTVGAFYLPMLVMM -IIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKK -KRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSSSERLKQIQIETAEAFANGCAEE -ASIAMLERQCNNGKKISSNDTPYS-------------RTREKLELKRERKAARTLAIITG -AFLICWLPFFIIALIGPF--VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSA -FQKIL-----FGKYRRGHR----------------------------------------- ------------------------------------------------------------- ---------------- -> 36== X95604 1 Bombyx mori serotonin receptor [InsectBiochem.Mol.Bi -MEGAEGQEELDWEALYLRLPLQNCSWNSTGWEPNWNVTV--------------------- -------------------VPNTTWWQASAPF-----DTPAALVRAAAKAVVLGLLILATV -VGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPE -LCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV --CIAQLL-GWKDPDWNQRVSEDLRCVVSQDV----------GYQIFATASSFYVPVLIIL -ILYWRIYQTARKRIRRRRGATARGGV--------GPPPVPAGGALVAGGGSGG------- ------------------------------IAAAVVAVIGRPLPTISETTTTGFTNVSSNN -TSPE--KQSCANGLEADPPTTGYGAVAAAYYPSLVRRKPKEAADSKRERKAAKTLAIITG -AFVACWLPFFVLAILVPT---CDCE-VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHA -FQRLL-----CGRRVRRRRAPQ-------------------------------------- ------------------------------------------------------------- ----------------