X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.gradle;h=8d84b25a235f474c18d751d4ad548c55c9340d12;hb=refs%2Fheads%2Ftask%2FJAL-3394_install4j8_option;hp=81c27510380951cb5e4aa6160077eb7f53a89953;hpb=42685807a6a6298af4715267245460bc5f774f84;p=jalview.git

diff --git a/build.gradle b/build.gradle
index 81c2751..8d84b25 100644
--- a/build.gradle
+++ b/build.gradle
@@ -56,10 +56,14 @@ ext {
   reportRsyncCmd = false
   buildDist = true
   buildProperties = buildPropertiesFile
+  getdownLauncher = jalviewDir + '/' + getdown_lib_dir + '/' + getdown_launcher
   switch (CHANNEL) {
 
     case "BUILD":
     // TODO: get bamboo build artifact URL for getdown artifacts
+    getdown_channel_base = bamboo_channelbase
+    getdown_channel_name = bamboo_planKey + '/'+JAVA_VERSION
+    getdown_app_base = bamboo_channelbase + '/'+ bamboo_planKey + bamboo_getdown_channel_suffix + '/'+JAVA_VERSION
     getdown_app_dir = getdown_app_dir_alt
     buildProperties = jalviewDir + "/" + classesDir +"/" + buildPropertiesFile
     break
@@ -103,6 +107,7 @@ ext {
       buildDist = false
     }
     reportRsyncCommand = true
+    getdownLauncher = jalviewDir + '/' + getdown_lib_dir + '/' + getdown_launcher_local
     break
 
     case "DEVELOP":
@@ -136,6 +141,7 @@ ext {
     getdown_app_base = file(getdownWebsiteDir).toURI().toString()
     getdown_app_dir = getdown_app_dir_alt
     buildProperties = jalviewDir + "/" + classesDir +"/" + buildPropertiesFile
+    getdownLauncher = jalviewDir + '/' + getdown_lib_dir + '/' + getdown_launcher_local
     break
 
     default: // something wrong specified
@@ -150,11 +156,12 @@ ext {
   //getdownJ11libDir = getdownWebsiteDir + '/' + getdown_j11lib_dir
   getdownResourceDir = getdownWebsiteDir + '/' + getdown_resource_dir
   getdownInstallDir = getdownWebsiteDir + '/' + getdown_install_dir
-  getdownLauncher = jalviewDir + '/' + getdown_launcher
   getdownFilesDir = jalviewDir + '/' + getdown_files_dir + '/' + JAVA_VERSION + '/'
   getdownFilesInstallDir = getdownFilesDir+"/"+getdown_install_dir
+  /* compile without modules -- using classpath libraries
   modules_compileClasspath = fileTree(dir: "$jalviewDir/$j11modDir", include: ["*.jar"])
   modules_runtimeClasspath = modules_compileClasspath
+  */
   gitHash = ""
   gitBranch = ""
 }
@@ -189,10 +196,12 @@ if (JAVA_VERSION.equals("1.8")) {
   getdown_alt_java_max_version = getdown_alt_java11_max_version
   getdown_alt_multi_java_location = getdown_alt_java11_txt_multi_java_location
   eclipse_java_runtime_name = "JavaSE-11"
+  /* compile without modules -- using classpath libraries
   additional_compiler_args += [
   '--module-path', ext.modules_compileClasspath.asPath,
   '--add-modules', j11modules
   ]
+  */
 } else if (JAVA_VERSION.equals("12") || JAVA_VERSION.equals("13")) {
   JAVA_INTEGER_VERSION = JAVA_VERSION
   libDir = j11libDir
@@ -203,10 +212,12 @@ if (JAVA_VERSION.equals("1.8")) {
   getdown_alt_java_max_version = getdown_alt_java11_max_version
   getdown_alt_multi_java_location = getdown_alt_java11_txt_multi_java_location
   eclipse_java_runtime_name = "JavaSE-11"
+  /* compile without modules -- using classpath libraries
   additional_compiler_args += [
   '--module-path', ext.modules_compileClasspath.asPath,
   '--add-modules', j11modules
   ]
+  */
 } else {
   throw new GradleException("JAVA_VERSION=$JAVA_VERSION not currently supported by Jalview")
 }
@@ -595,7 +606,7 @@ task convertBuildingMD(type: Exec) {
   }
 
   doFirst {
-    if (false && pandoc != null && file(pandoc).exists()) {
+    if (pandoc != null && file(pandoc).exists()) {
         commandLine pandoc, '-s', '-o', buildingHTML, '--metadata', 'pagetitle="Building Jalview from Source"', '--toc', '-H', css, buildingMD
     } else {
         println("Cannot find pandoc. Skipping convert building.md to HTML")
@@ -630,7 +641,7 @@ task copyHelp(type: Copy) {
     exclude '**/*.gif'
       exclude '**/*.jpg'
       exclude '**/*.png'
-      filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION])
+      filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION,'Year-Rel': getDate("yyyy")])
   }
   from(inputDir) {
     include '**/*.gif'
@@ -724,7 +735,7 @@ task compileLinkCheck(type: JavaCompile) {
   outputs.file("$jalviewDir/$utilsDir/BufferedLineReader.class")
 }
 
-def helplinkscheckeroutputfile = file("$jalviewDir/$utilsDir/HelpLinksChecker.out")
+def helplinkscheckertouchfile = file("$jalviewDir/$utilsDir/HelpLinksChecker.touch")
 task linkCheck(type: JavaExec) {
   dependsOn prepare, compileLinkCheck
   classpath = files("$jalviewDir/$utilsDir")
@@ -733,14 +744,20 @@ task linkCheck(type: JavaExec) {
   def help = "$classes/$helpDir"
   args = [ "$classes/$helpDir", "-nointernet" ]
 
-  doFirst {
-    helplinkscheckeroutputfile.createNewFile()
-    standardOutput new FileOutputStream(helplinkscheckeroutputfile, false)
+  doLast {
+    helplinkscheckertouchfile.createNewFile()
   }
 
-  outputs.file(helplinkscheckeroutputfile)
+  inputs.dir("$classes/$helpDir")
+  outputs.file(helplinkscheckertouchfile)
 }
 
+// import the pubhtmlhelp target
+ant.properties.basedir = "$jalviewDir"
+ant.properties.helpBuildDir = jalviewDirAbsolutePath+"/$classes/$helpDir"
+ant.importBuild "$utilsDir/publishHelp.xml"
+
+
 task cleanPackageDir(type: Delete) {
   delete fileTree("$jalviewDir/$packageDir").include("*.jar")
 }
@@ -950,6 +967,9 @@ task getdownWebsite() {
 
     copy {
       from getdownLauncher
+      if (file(getdownLauncher).getName() != getdown_launcher) {
+        rename(file(getdownLauncher).getName(), getdown_launcher)
+      }
       into project.ext.getdownWebsiteDir
     }
 
@@ -958,6 +978,9 @@ task getdownWebsite() {
         from getdown_txt
         from getdownLauncher
         from getdownWebsiteDir+"/"+getdown_build_properties
+        if (file(getdownLauncher).getName() != getdown_launcher) {
+          rename(file(getdownLauncher).getName(), getdown_launcher)
+        }
         into getdownInstallDir
       }
 
@@ -972,6 +995,9 @@ task getdownWebsite() {
       from launch_jvl
       from getdownLauncher
       from getdownWebsiteDir+"/"+getdown_build_properties
+      if (file(getdownLauncher).getName() != getdown_launcher) {
+        rename(file(getdownLauncher).getName(), getdown_launcher)
+      }
       into getdownFilesDir
     }
 
@@ -992,7 +1018,9 @@ task getdownDigest(type: JavaExec) {
   group = "distribution"
   description = "Digest the getdown website folder"
   dependsOn getdownWebsite
-  classpath = files(jalviewDir + '/' + getdown_core, jalviewDir+'/'+getdown_launcher)
+  doFirst {
+    classpath = files(getdownWebsiteDir + '/' + getdown_launcher)
+  }
   main = "com.threerings.getdown.tools.Digester"
   args project.ext.getdownWebsiteDir
   inputs.dir(project.ext.getdownWebsiteDir)
@@ -1029,15 +1057,16 @@ clean {
 install4j {
   def install4jHomeDir = "/opt/install4j"
   def hostname = "hostname".execute().text.trim()
+  def install4jName = (install4jVersion >= 8) ? "install4j"+install4jVersion:"install4j"
   if (hostname.equals("jv-bamboo")) {
-    install4jHomeDir = System.getProperty("user.home")+"/buildtools/install4j"
+    install4jHomeDir = System.getProperty("user.home")+"/buildtools/"+install4jName
   } else if (OperatingSystem.current().isMacOsX()) {
-    install4jHomeDir = '/Applications/install4j.app/Contents/Resources/app'
+    install4jHomeDir = '/Applications/'+install4jName+'.app/Contents/Resources/app'
     if (! file(install4jHomeDir).exists()) {
       install4jHomeDir = System.getProperty("user.home")+install4jHomeDir
     }
   } else if (OperatingSystem.current().isLinux()) {
-    install4jHomeDir = System.getProperty("user.home")+"/buildtools/install4j"
+    install4jHomeDir = System.getProperty("user.home")+"/buildtools/"+install4jName
   }
   installDir = file(install4jHomeDir)
   mediaTypes = Arrays.asList(install4jMediaTypes.split(","))
@@ -1060,9 +1089,10 @@ task copyInstall4jTemplate(type: Copy) {
   macosJavaVMTgz = System.env.HOME+"/buildtools/jre/openjdk-java_vm/install4j/tgz/macos-jre"+JAVA_VERSION+".tar.gz"
   windowsJavaVMDir = System.env.HOME+"/buildtools/jre/openjdk-java_vm/getdown/windows-jre"+JAVA_VERSION+"/jre"
   windowsJavaVMTgz = System.env.HOME+"/buildtools/jre/openjdk-java_vm/install4j/tgz/windows-jre"+JAVA_VERSION+".tar.gz"
+  def i4jTemplate = (install4jVersion >= 8)?install4j8Template:install4jTemplate
   from (install4jDir) {
-    include install4jTemplate
-    rename (install4jTemplate, install4jConfFile)
+    include i4jTemplate
+    rename (i4jTemplate, install4jConfFile)
     filter(ReplaceTokens, beginToken: '', endToken: '', tokens: ['9999999999': JAVA_VERSION])
     filter(ReplaceTokens, beginToken: '$$', endToken: '$$',
     tokens: [
@@ -1088,11 +1118,20 @@ task copyInstall4jTemplate(type: Copy) {
     }
   }
   into install4jDir
+
+  inputs.files(i4jTemplate)
+  if (install4jVersion >= 8) {
+    inputs.files(install4jDir+"/"+install4j8InstallerFileAssociations)
+  } else {
+    inputs.files(install4jDir+"/"+install4jInstallerFileAssociations)
+    inputs.files(install4jDir+"/"+install4jInfoPlistFileAssociations)
+  }
   outputs.files(install4jConf)
 
   doLast {
     // include file associations in installer
-    def installerFileAssociationsXml = file("$install4jDir/$install4jInstallerFileAssociations").text
+    def i4jIFA = (install4jVersion >= 8)?install4j8InstallerFileAssociations:install4jInstallerFileAssociations
+    def installerFileAssociationsXml = file("$install4jDir/$i4jIFA").text
     ant.replaceregexp(
       byline: false,
       flags: "s",
@@ -1142,3 +1181,80 @@ clean {
   delete install4jConf
 }
 
+task sourceDist (type: Tar) {
+  
+  def VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_")
+  def outputFileName = project.name + "_" + VERSION_UNDERSCORES + ".tar.gz"
+  // cater for buildship < 3.1 [3.0.1 is max version in eclipse 2018-09]
+  try {
+    archiveFileName = outputFileName
+  } catch (Exception e) {
+    archiveName = outputFileName
+  }
+  
+  compression Compression.GZIP
+  
+  into project.name
+
+  def EXCLUDE_FILES=["build/*","bin/*","test-output/","test-reports","tests","clover*/*"
+  ,".*"
+  ,"benchmarking/*"
+  ,"**/.*"
+  ,"*.class"
+  ,"**/*.class","$j11modDir/**/*.jar","appletlib","**/*locales"
+  ,"*locales/**",
+  ,"utils/InstallAnywhere"] 
+  def PROCESS_FILES=[   "AUTHORS",
+  "CITATION",
+  "FEATURETODO",
+  "JAVA-11-README",
+  "FEATURETODO",
+  "LICENSE",
+  "**/README",
+  "RELEASE",
+  "THIRDPARTYLIBS","TESTNG",
+  "build.gradle",
+  "gradle.properties",
+  "**/*.java",
+  "**/*.html",
+  "**/*.xml",
+  "**/*.gradle",
+  "**/*.groovy",
+  "**/*.properties",
+  "**/*.perl",
+  "**/*.sh"]
+
+  from(jalviewDir) {
+    exclude (EXCLUDE_FILES)
+    include (PROCESS_FILES)
+    filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION,'Year-Rel': getDate("yyyy")])
+  }
+  from(jalviewDir) {
+    exclude (EXCLUDE_FILES)
+    exclude (PROCESS_FILES)
+  exclude ("appletlib")
+  exclude ("**/*locales")
+  exclude ("*locales/**")
+  exclude ("utils/InstallAnywhere")
+
+    exclude (getdown_files_dir)
+  exclude (getdown_website_dir)
+
+  // exluding these as not using jars as modules yet
+  exclude ("$j11modDir/**/*.jar")
+}
+//  from (jalviewDir) {
+//    // explicit includes for stuff that seemed to not get included
+//    include(fileTree("test/**/*."))
+//    exclude(EXCLUDE_FILES)
+//    exclude(PROCESS_FILES)
+//  }
+}
+
+task helppages  {
+  dependsOn copyHelp
+  dependsOn pubhtmlhelp
+  
+  inputs.dir("$classes/$helpDir")
+  outputs.dir("$helpOutputDir")
+}