X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.gradle;h=e6a9c34edab94d622727c04243dd02c706f4abfd;hb=a3b8fa7024e7034866f6fe6c18c53177fa31c414;hp=d065d1bace18faf60464ed3b18b54dfd706bc252;hpb=9a8726cf2a2f944a1adb28b497bc4d92405cc42a;p=jalview.git

diff --git a/build.gradle b/build.gradle
index d065d1b..e6a9c34 100644
--- a/build.gradle
+++ b/build.gradle
@@ -143,6 +143,11 @@ ext {
     getdown_app_dir = getdown_app_dir_release
     buildProperties = string("${resourceDir}/${build_properties_file}")
     reportRsyncCommand = true
+    // Don't ignore transpile errors for release build
+    if (jalviewjs_ignore_transpile_errors.equals("true")) {
+      jalviewjs_ignore_transpile_errors = "false"
+      println("Setting jalviewjs_ignore_transpile_errors to 'false'")
+    }
     break
 
     case "ARCHIVE":
@@ -194,6 +199,11 @@ ext {
     getdown_app_dir = getdown_app_dir_alt
     buildProperties = string("${resourceDir}/${build_properties_file}")
     reportRsyncCommand = true
+    // Don't ignore transpile errors for release build
+    if (jalviewjs_ignore_transpile_errors.equals("true")) {
+      jalviewjs_ignore_transpile_errors = "false"
+      println("Setting jalviewjs_ignore_transpile_errors to 'false'")
+    }
     break
 
     case ~/^SCRATCH(|-[-\w]*)$/:
@@ -451,7 +461,7 @@ eclipse {
         }
         cp.entries.removeAll(removeTheseToo)
 
-        //cp.entries += new Output("${eclipse_bin_dir}/main")
+        cp.entries += new Output("${eclipse_bin_dir}/main")
         if (file(helpSourceDir).isDirectory()) {
           cp.entries += new Library(fileReference(helpSourceDir))
         }
@@ -518,6 +528,7 @@ eclipse {
     javaRuntimeName = eclipse_java_runtime_name
 
     // add in jalview project specific properties/preferences into eclipse core preferences
+    // and also the codestyle XML file
     file {
       withProperties { props ->
         def jalview_prefs = new Properties()
@@ -529,6 +540,22 @@ eclipse {
             props.putAt(t, v)
           }
         }
+        // codestyle file -- overrides previous formatter prefs
+        def csFile = file("${jalviewDirAbsolutePath}/${eclipse_codestyle_file}")
+        if (csFile.exists()) {
+          XmlParser parser = new XmlParser()
+          def profiles = parser.parse(csFile)
+          def profile = profiles.'profile'.find { p -> (p.'@kind' == "CodeFormatterProfile" && p.'@name' == "Jalview") }
+          if (profile != null) {
+            profile.'setting'.each { s ->
+              def id = s.'@id'
+              def value = s.'@value'
+              if (id != null && value != null) {
+                props.putAt(id, value)
+              }
+            }
+          }
+        }
       }
     }
 
@@ -689,7 +716,7 @@ task createBuildProperties(type: WriteProperties) {
 
 clean {
   doFirst {
-	delete buildProperties
+    delete buildProperties
   }
 }
 
@@ -1851,7 +1878,12 @@ DEBUG: ${eclipseDebug}
     if (stdout.toString().contains("Error processing ")) {
       // j2s did not complete transpile
       //throw new TaskExecutionException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
-      throw new GradleException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+      if (jalviewjs_ignore_transpile_errors.equals("true")) {
+        println("IGNORING TRANSPILE ERRORS")
+        println("See eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+      } else {
+        throw new GradleException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+      }
     }
   }
 
@@ -1972,7 +2004,7 @@ task jalviewjsBuildAllCores {
 
     def file = hash['file']
     if (! file.exists()) {
-      println("...classlist file '"+file.getPath()+"' does not exist, skipping")
+      //println("...classlist file '"+file.getPath()+"' does not exist, skipping")
       return false // this is a "continue" in groovy .each closure
     }
     def name = hash['name']
@@ -2045,7 +2077,8 @@ task jalviewjsBuildAllCores {
     'list': allJsFiles,
     'name': allClasslistName
   ]
-  jalviewjsCoreClasslists += allClasslist
+  // not including this version of "all" core at the moment
+  //jalviewjsCoreClasslists += allClasslist
   inputs.files(allClasslist['list'])
   outputs.file(allClasslist['jsfile'])
   outputs.file(allClasslist['zjsfile'])
@@ -2182,12 +2215,19 @@ task jalviewjsBuildSite {
 }
 
 
-task cleanJalviewjsSite {
+task cleanJalviewjsTransferSite {
   doFirst {
     delete "${jalviewDir}/${jalviewjsTransferSiteJsDir}"
     delete "${jalviewDir}/${jalviewjsTransferSiteLibDir}"
     delete "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}"
     delete "${jalviewDir}/${jalviewjsTransferSiteCoreDir}"
+  }
+}
+
+
+task cleanJalviewjsSite {
+  dependsOn cleanJalviewjsTransferSite
+  doFirst {
     delete "${jalviewDir}/${jalviewjsSiteDir}"
   }
 }
@@ -2296,8 +2336,8 @@ task jalviewjsIDE_checkJ2sPlugin {
     def eclipseJ2sPlugin = "${eclipseHome}/dropins/${j2sPluginFile.getName()}"
     def eclipseJ2sPluginFile = file(eclipseJ2sPlugin)
     if (!eclipseJ2sPluginFile.exists()) {
-      def msg = "Eclipse J2S Plugin is not installed"
-      println(msg)
+      def msg = "Eclipse J2S Plugin is not installed (could not find '${eclipseJ2sPlugin}')"
+      System.err.println(msg)
       if (! copyPlugin) {
         throw new GradleException(msg)
       }
@@ -2314,7 +2354,7 @@ task jalviewjsIDE_checkJ2sPlugin {
      
     if (j2sPluginMd5 != eclipseJ2sPluginMd5) {
       def msg = "WARNING! Eclipse J2S Plugin '${eclipseJ2sPlugin}' is different to this commit's version '${j2sPlugin}'"
-      println(msg)
+      System.err.println(msg)
       if (! copyPlugin) {
         throw new StopExecutionException(msg)
       }
@@ -2330,7 +2370,7 @@ task jalviewjsIDE_checkJ2sPlugin {
         into eclipseJ2sPluginFile.getParent()
       }
     } else {
-      def msg = "Eclipse J2S Plugin is the same as '${j2sPlugin}'"
+      def msg = "Eclipse J2S Plugin is the same as '${j2sPlugin}' (this is good)"
       println(msg)
     }
   }
@@ -2351,9 +2391,7 @@ task jalviewjsIDE_SyncCore {
 }
 
 
-task jalviewjsIDE_PrepareSite {
-  group "00 JalviewJS in Eclipse"
-  description "Sync libs and resources to site dir, but not closure cores"
+task jalviewjsIDE_SyncSiteAll {
   dependsOn jalviewjsSyncAllLibs
   dependsOn jalviewjsSyncResources
   dependsOn jalviewjsSyncSiteResources
@@ -2361,6 +2399,18 @@ task jalviewjsIDE_PrepareSite {
 }
 
 
+cleanJalviewjsTransferSite.mustRunAfter jalviewjsIDE_SyncSiteAll
+
+
+task jalviewjsIDE_PrepareSite {
+  group "00 JalviewJS in Eclipse"
+  description "Sync libs and resources to site dir, but not closure cores"
+
+  dependsOn jalviewjsIDE_SyncSiteAll
+  dependsOn cleanJalviewjsTransferSite
+}
+
+
 task jalviewjsIDE_AssembleSite {
   group "00 JalviewJS in Eclipse"
   description "Assembles unzipped supporting zipfiles, resources, site resources and closure cores into the Eclipse transpiled site"